1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagcttttattctccttgttaagataaagaatccttaatttgaaagactcaatgctttgttgaaaatgtattctggaatcatgaatattaacactttgtaatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGGAAATTCCCGGGTGCCTGTACACG
species | Zea mays |
transcript | GRMZM2G133885_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTTCGGCTCGCACCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGEST: gi|32912653|gb|CF017465.1|CF017465
genomic: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
EST: GGATCGTTGGTCATTTTCCGGCTCGCACCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGEST: gi|32913231|gb|CF018043.1|CF018043
genomic: GGATCGTTGGTCATTTTCCGGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
EST: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGEST: gi|211196234|gb|FL472452.1|FL472452
genomic: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
EST: GGCTCGCCCCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGEST: gi|78103985|gb|DV522403.1|DV522403
genomic: GGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
EST: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGEST: gi|60396723|gb|DN229588.1|DN229588
genomic: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
EST: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAG GATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
genomic: CGAATGCTTTAAGCAACGGATCGTTGGTCATTTTCCGGCTCGCACCTCAGgtaagagctt ... taatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTG
gctttgttgaaaatgtattctggaatcatgaatattaacactttgtaatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGGAAATTCCCGGGTGCCTGTACACG
tattaac putative branch site (score: 1)
aatattaacactttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagcttttattctccttgttaagataaagaatccttaatttgaaagactcaatgctttgttgaaaatgtattctggaatcatgaatattaacactttgtaatatgcagGATTACCACAGGTTTCACGTACCAGTCTCAGGAACTGTGGAGAAATTTGTGGAAATTCCCGGGTGCCTGTACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA