1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagcaactgtataggggatagctggcaaaaatccttttctttagcgtttcagtatgcccaatcacgtctctgataaaatgtgtttatgtgctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTGTGGCTAATATCGCTGCAAAGCTCGAGTACATGGGACCTTGCCGAAGTG
species | Zea mays |
transcript | GRMZM2G133359_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTACACGGATGAGGTGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|37426168|gb|CF650835.1|CF650835
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|211380851|gb|FL107217.1|FL107217
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|211380854|gb|FL107220.1|FL107220
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|211380855|gb|FL107221.1|FL107221
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|148934194|gb|EC878215.2|EC878215
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|211380852|gb|FL107218.1|FL107218
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTEST: gi|211380853|gb|FL107219.1|FL107219
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
EST: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAG CTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
genomic: ACTACACGGATGAGATGGACGCGGTGAACATTGCGCAGGATGTCACCCAGgtgccgcggc ... ctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGT
gtttcagtatgcccaatcacgtctctgataaaatgtgtttatgtgctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTGTGGCTAATATCGCTGCAAAGCTCGAGTACATGGGACCTTGCCGAAGTG
ctctgat putative branch site (score: 4)
ataaaatgtgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcaactgtataggggatagctggcaaaaatccttttctttagcgtttcagtatgcccaatcacgtctctgataaaatgtgtttatgtgctgttaacagCTCATTGGAAAAACACCAATGGTGTATCTCAATAGAGTTGCTGACGGATGTGTGGCTAATATCGCTGCAAAGCTCGAGTACATGGGACCTTGCCGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- gcaactg
- - - - - - - - - - gctggca
- - - - - - - - - - - - - - - - - - - - - - - - - -gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt