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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatataacaggaatacatttttttttcttctgtcttctatttaacatattctagttgtagttgcctatttgtctgctaaagtttgatttgaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGTCCAGATTGACACTGGGAGTGATATATTGTGGGTCACTTGCAGTCCTTGC

Basic information

species Zea mays
transcript GRMZM2G133029_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133029_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g56930.2 (Oryza sativa), 3'ss of exon 1
tgatataacaggaatacatttttttttcttctgtcttctatttaacatattctagttgtagttgc--ctatttgtctgctaaagtttga--tttgaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGTCCAGATTGACACTGGGAGTGATATATTGTGGGTCACTTGCAGTCCTTGC
 ||  | |    | |     ||||    ||  |  |  ||||| | || |   ||   |  ||||  ||| || | | ||||    |    |||||||||||||||| |||||||| || |||||||| |||| |||  |||| ||||  || ||||||||||||||||| ||||| || || |||||  | ||||| ||||||
-gac-tgatgccatttttcattttgcaatttggcttgttatttgaaat-taggagacctttttgcaactactt-tatcctaattcctagtgtttgaatttgcagGCTCTATTTTACGCGTGTGAAATTGGGAAGCCCACCAAAAGAATATTTTGTCCAGATTGACACTGGCAGTGACATCTTATGGGTAGCGTGCAGCCCTTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149087990|gb|EE177209.2|EE177209
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|110539477|gb|EE043397.1|EE043397
EST:     CGTACATGGTCGG                         GCTTTATTTTACCCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCG
genomic: CGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTA-CCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCG
EST: gi|19436559|gb|BM952969.1|BM952969
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|149096290|gb|EE182005.2|EE182005
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|148983003|gb|EE028898.2|EE028898
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|149044646|gb|EE047618.2|EE047618
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|148940293|gb|EC885075.2|EC885075
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|148966491|gb|EE017508.2|EE017508
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGGTGG                      
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTC----GGgtgggtgagc ... gaatttg
EST: gi|148961307|gb|EE012032.2|EE012032
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
EST: gi|149108251|gb|EE292593.2|EE292593
EST:     GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGG                         GCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT
genomic: GGCGTGGTGGACTTCCCCGTCGAGGGCTCCGCCAATCCGTACATGGTCGGgtgggtgagc ... gaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattctagttgtagttgcctatttgtctgctaaagtttgatttgaatttgcagGCTTTATTTTACCCGGGTGAAATTAGGAAACCCGGCAAAGGAATTCTTCGTCCAGATTGACACTGGGAGTGATATATTGTGGGTCACTTGCAGTCCTTGC
                                     tttgatttgaattt  TA-rich tract