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...acttggagctttctcagtccgtggcttaacgctgtgggtaccttgcattgcagaaaaaagaggcaactctggggcataacgtacttcaccttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAGACATATGTTGTGATTTCTCGATGGCGAGGAGATGAAACAGGTGTGGGG
species | Zea mays |
transcript | GRMZM2G124151_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|149097117|gb|EE182928.2|EE182928
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|211061495|gb|FL337017.1|FL337017
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCCCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|149089528|gb|EE178775.2|EE178775
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|149108548|gb|EE292834.2|EE292834
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|71437253|gb|DR818303.1|DR818303
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|149077297|gb|EE165973.2|EE165973
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAEST: gi|71437254|gb|DR818304.1|DR818304
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
EST: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACT GTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
genomic: GCGCCTCGCCGAATTCGCCGCTCCTCGCACTGCAACACGCCCGGACCACTgtaagtttgc ... ttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAA
cattgcagaaaaaagaggcaactctggggcataacgtacttcaccttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAGACATATGTTGTGATTTCTCGATGGCGAGGAGATGAAACAGGTGTGGGG
cttcacctt CT-rich tract
agaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggagctttctcagtccgtggcttaacgctgtgggtaccttgcattgcagaaaaaagaggcaactctggggcataacgtacttcaccttgattacagGTTACTGCATGCCATGTAGTATTTTATTATTGGTGGAGGTTGTCACCACAAGACATATGTTGTGATTTCTCGATGGCGAGGAGATGAAACAGGTGTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -tggagct
- - - - - - - - - - - - - - -cgctgtg
- - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggggc