1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgtgttccttaatttttattccagttcattcatatcaatatgtgcatactaccatgaacttatatcctgatgacaacattgtgaccttgtacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTTTGAAGGCTGATGGAGCATATAAAGGATCTAGATCACTAAGATATGACA
species | Zea mays |
transcript | GRMZM2G115304_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTEST: gi|87153485|gb|DY398274.1|DY398274
genomic: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
EST: AGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTEST: gi|149113041|gb|EE295814.2|EE295814
genomic: AGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
EST: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTEST: gi|148970816|gb|EE021579.2|EE021579
genomic: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
EST: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTEST: gi|149076658|gb|EE165299.2|EE165299
genomic: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
EST: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTEST: gi|148971814|gb|EE022561.2|EE022561
genomic: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
EST: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCC AAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
genomic: TCGCCGCACGCCTACGTGCGCTCGTCGAGGAGACCAAGGCTGCGTACCCCgtaagaagct ... tacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTT
catactaccatgaacttatatcctgatgacaacattgtgaccttgtacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTTTGAAGGCTGATGGAGCATATAAAGGATCTAGATCACTAAGATATGACA
tcctgat putative branch site (score: 46)
aacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgttccttaatttttattccagttcattcatatcaatatgtgcatactaccatgaacttatatcctgatgacaacattgtgaccttgtacattttagAAAACAAACTTCAAGGAATGGAAGCAAGTACTTCAAGAACTTGGCAGATTTTTGAAGGCTGATGGAGCATATAAAGGATCTAGATCACTAAGATATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -tgttcct
- - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg