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...actgtttggctttacatctgaatgctcctcttgttatgtgatacttttcagtgttgcacttcatcaatacctcaatatttttgttgccgatttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCCCTCAG
species | Zea mays |
transcript | GRMZM2G107089_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAG GATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCEST: gi|148950310|gb|EC895869.2|EC895869
genomic: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAGgtcagtggtc ... tttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
EST: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAG GATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCEST: gi|148962199|gb|EE013014.2|EE013014
genomic: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAGgtcagtggtc ... tttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
EST: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAG GATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCEST: gi|148944925|gb|EC890084.2|EC890084
genomic: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAGgtcagtggtc ... tttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
EST: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAG GATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCEST: gi|71760344|gb|DR958281.1|DR958281
genomic: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAGgtcagtggtc ... tttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
EST: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAG GATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
genomic: GGACCATGGTCATTCGCCCCTACGGATACGCCATCTGGGAGGCCATCCAGgtcagtggtc ... tttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTC
tttcagtgttgcacttcatcaatacctcaatatttttgttgccgatttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCCCTCAG
tcaatatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtttggctttacatctgaatgctcctcttgttatgtgatacttttcagtgttgcacttcatcaatacctcaatatttttgttgccgatttgttgtagGATTATTTGAATGTCAAATTCAAGGAGACAGGGCACAGCAACATGTACTTCCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
actgttt
- - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc