1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagctcgctggatcccccctatcaccgcactcgtccactcctgtccggattttccctcttctttttcgtgctcttggcgcccctctcggcgatttgcttgactctgatgggtttggggtttggtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
species | Zea mays |
transcript | GRMZM2G101571_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|37622088|gb|CF675141.1|CF675141
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|87154400|gb|DY399189.1|DY399189
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|92088107|gb|EB484338.1|EB484338
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216835|gb|FL144756.1|FL144756
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|78021287|gb|DV489674.1|DV489674
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: TCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304813|gb|FL144776.1|FL144776
genomic: TCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|87155055|gb|DY399844.1|DY399844
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: GCACCGATCGGACGGGAATCGATCGAGAG GCAGGGGGCAGCATTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|32868635|gb|CF008317.1|CF008317
genomic: GCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|74240317|gb|DT648231.1|DT648231
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216837|gb|FL144758.1|FL144758
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216833|gb|FL144754.1|FL144754
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216838|gb|FL144759.1|FL144759
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGCEST: gi|28910030|gb|CB331222.1|CB331222
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGC
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211306828|gb|FL144778.1|FL144778
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|93281723|gb|EB673987.1|EB673987
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304811|gb|FL144774.1|FL144774
genomic: CCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304800|gb|FL144763.1|FL144763
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304807|gb|FL144770.1|FL144770
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304806|gb|FL144769.1|FL144769
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|26455131|gb|CA826714.1|CA826714
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304808|gb|FL144771.1|FL144771
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|60348036|gb|DN215009.1|DN215009
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: AATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|22546781|gb|BU099092.1|BU099092
genomic: AATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAG-GCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|60343725|gb|DN210698.1|DN210698
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304809|gb|FL144772.1|FL144772
genomic: CGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216840|gb|FL144761.1|FL144761
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211306827|gb|FL144777.1|FL144777
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304812|gb|FL144775.1|FL144775
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304803|gb|FL144766.1|FL144766
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAKAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216832|gb|FL144753.1|FL144753
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216839|gb|FL144760.1|FL144760
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211216836|gb|FL144757.1|FL144757
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304801|gb|FL144764.1|FL144764
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCGAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|30160483|gb|CB924212.1|CB924212
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGGEST: gi|211304805|gb|FL144768.1|FL144768
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
EST: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAG GCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
genomic: CAGCGCTGCGAATCCCAATCCGCACCGATCCGACGCGAATCGATCGAGAGgtgagctcgc ... gtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
cgcccctctcggcgatttgcttgactctgatgggtttggggtttggtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
ctctgat putative branch site (score: 383)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcgctggatcccccctatcaccgcactcgtccactcctgtccggattttccctcttctttttcgtgctcttggcgcccctctcggcgatttgcttgactctgatgggtttggggtttggtgcgtgcagGCAGGGGGCAGCACTAATCGAATCGAGACTAGCGCCATGAACCCGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG