Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttctctgccctcgccgatccgttcgttcaaaggccggcctatcgattccacgttcgctttttttgggtttttgtgtgtcgtgcgatctgatctcgatctgcctgggtttctgggggttctgattggggccgtttctgttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC

Basic information

species Zea mays
transcript GRMZM2G097164_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097164_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g48930.1 (Oryza sativa), 3'ss of exon 1
gtaggttctctgccctcgccgatccgttcgttcaaaggccg--gcctatcgattccacgttcgctttttttgggtttttgtgtgtcgtgcgatctgatctc--gatctgcctgggtttc---------tggg-----ggttctgattggggccg------tttctgttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC
||| |  | | |||  ||||   || | |  || |    ||    | |||  | |  || |    |||||| || ||| |  |  |  |||||||| || |  ||||||  | ||||           ||||     ||| || |||| ||  |      ||  |||   ||||||||||| || || |||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||   ||||||||| ||||||| ||||| ||||||
gtaagacccc-gccgccgcccccccctcctctcgatcctcgcgttcgatccgtccgccggttttgttttttagggtttggaattgca-gcgatctggtcccccgatctggtttggttatggaaggggatgggtttttggtccttattgcggttggtgtgcttcgtgtgttcgcagGGTGCAGTTCACCGAGTTCATCCAGAAGAATCTCCACCTGTATCAGTTCCGCAACAACATCCCGCTCAGCACCGCCGCCACCGCCAATTTCACCCGCGGC

upper sequence: GRMZM2G097164_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G44200.1 (Glycine max), 3'ss of exon 1
gtaggttctctgccctcgccgatccgttcgttcaaaggccggcctatcgattccacgttcgctttttttgggtttttgtgtgtcgtgcgatctgatctcgatctgcctgggtttctgggggttctgattggggccgtttctgttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC
                                                                       || | |   | || |  | |  |   |   |||  |    | |||     | ||  ||    || |   |  |     ||||| ||||| || |||| ||| ||||| ||| ||  | |||| |||||||| |||  |||||| ||| | ||||||||||||||||| |||||||| |||
-----------------------------------------------------------------------gtatctac-tatc-taggcttagggtttcttctctcccactctcttccaatcctc-ttatccccttcctttctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211262505|gb|FL327826.1|FL327826
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211020752|gb|FL319298.1|FL319298
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211248362|gb|FL328676.1|FL328676
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211270103|gb|FL340197.1|FL340197
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211451444|gb|FL365473.1|FL365473
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211281117|gb|FL312213.1|FL312213
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|28188101|gb|CB179711.1|CB179711
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211047073|gb|FL348419.1|FL348419
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211010589|gb|FL355816.1|FL355816
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211366949|gb|FL314671.1|FL314671
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211020933|gb|FL325312.1|FL325312
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211094167|gb|FL353100.1|FL353100
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211026559|gb|FL358132.1|FL358132
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211216139|gb|FL344292.1|FL344292
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211367005|gb|FL316922.1|FL316922
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211088466|gb|FL317118.1|FL317118
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTC
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTC
EST: gi|211127775|gb|FL330736.1|FL330736
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211213564|gb|FL344276.1|FL344276
EST:     TGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACTAGTTCCG
genomic: TGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGA-GCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|33285490|gb|CF075285.1|CF075285
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211049148|gb|FL315723.1|FL315723
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211009566|gb|FL317970.1|FL317970
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211467654|gb|FL334992.1|FL334992
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211170137|gb|FL323711.1|FL323711
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211280213|gb|FL366623.1|FL366623
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211232530|gb|FL315422.1|FL315422
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|33104116|gb|CF064076.1|CF064076
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211492547|gb|FL352077.1|FL352077
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211070129|gb|FL344103.1|FL344103
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCWATACAGAAGAACCTCCACCTGTACCAGTTCC
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTC-ATACAGAAGAACCTCCACCTGTACCAGTTCC
EST: gi|211120599|gb|FL351201.1|FL351201
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|19436548|gb|BM952958.1|BM952958
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211512825|gb|FL354901.1|FL354901
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211230850|gb|FL333961.1|FL333961
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211503051|gb|FL332839.1|FL332839
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211087062|gb|FL366800.1|FL366800
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211370217|gb|FL335354.1|FL335354
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211277756|gb|FL330394.1|FL330394
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211377653|gb|FL316984.1|FL316984
EST:     GTACTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211220638|gb|FL341043.1|FL341043
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211492288|gb|FL341332.1|FL341332
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211301699|gb|FL323433.1|FL323433
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211444893|gb|FL349597.1|FL349597
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGWGATCG                         GGTGCAATTTACGGAGTTCATWCAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|110519136|gb|EE023723.1|EE023723
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211283204|gb|FL331380.1|FL331380
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211381164|gb|FL350970.1|FL350970
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
EST: gi|211096725|gb|FL356867.1|FL356867
EST:     GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCG                         GGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG
genomic: GTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 30

CCGCCGTGCAGAGTATTCTCGTCCACAAGACCGACGAGGACAAGGTGATGGTGCTCGACTCGCAAAAGCTGATGGGCGCTTCAGGGGAGCCTGGTGATCGgtaggttctc ... gttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgatctgcctgggtttctgggggttctgattggggccgtttctgttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC
                         ttctgat  putative branch site (score: 30)
                                        tttctgtt  putative PPT