1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcatatttcccccttacattcgtttacacatcgatcgccaaaactgagatgtggttgatggcagcatctgattcgaattttgtgttcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
species | Zea mays |
transcript | GRMZM2G095114_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTTCCTCCGATCGGGCCTTTTTAATCCGCGGATCCCGTACAAGATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGEST: gi|4610157|gb|AI600996.1|AI600996
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
EST: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCG-GGATCCCGTACAAGATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
genomic: CCTCCTTCCTCCGATCTGGCCTTTTTAATCCGCGGATCCCGTACAAGATGgtgcatattt ... tcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
aaactgagatgtggttgatggcagcatctgattcgaattttgtgttcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
atctgat putative branch site (score: 4)
tgttctt putative PPT
aattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatatttcccccttacattcgtttacacatcgatcgccaaaactgagatgtggttgatggcagcatctgattcgaattttgtgttcttatgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC