1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
species | Zea mays |
transcript | GRMZM2G094497_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|31352565|gb|CD436922.1|CD436922
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32928465|gb|CF033277.1|CF033277
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|33092363|gb|CF052357.1|CF052357
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|31352616|gb|CD436973.1|CD436973
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32928932|gb|CF033744.1|CF033744
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTACCGATG ATATCGCACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGCCAGAEST: gi|32929097|gb|CF033909.1|CF033909
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|211466584|gb|FL062035.1|FL062035
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: CAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|67022236|gb|CO450985.1|CO450985
genomic: CAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32928322|gb|CF033134.1|CF033134
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCACTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32928990|gb|CF033802.1|CF033802
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32944174|gb|CF048993.1|CF048993
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|4152268|gb|AI372402.1|AI372402
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: TACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|32838699|gb|CD978380.1|CD978380
genomic: TACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGAEST: gi|31352900|gb|CD437257.1|CD437257
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: TTACCCAGATTCCTATTCTAACAATGCCTAACGATG ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: TTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
tgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
ccctaaa putative branch site (score: 3)
tctacccct CT-rich tract
atttaatactagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC