1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acatttcatctactcactgtagtatttgtttccacacaactctgaaactatccattggtcaatacatctcacaggctcattgcttattgactgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACTGTGTGATGATGCCTTCTTGGATCACCCAAACACCTGAAACTGGTGTCA
species | Zea mays |
transcript | GRMZM2G093065_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACEST: gi|148944579|gb|EC889708.2|EC889708
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACEST: gi|71774031|gb|DR971917.1|DR971917
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACEST: gi|71437410|gb|DR818460.1|DR818460
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACEST: gi|211440370|gb|FL218743.1|FL218743
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACEST: gi|93016557|gb|EB642077.1|EB642077
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
EST: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
genomic: CCTCGCCGCTGCCTCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTAC
aactatccattggtcaatacatctcacaggctcattgcttattgactgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACTGTGTGATGATGCCTTCTTGGATCACCCAAACACCTGAAACTGGTGTCA
tattgac putative branch site (score: 37)
aatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttcatctactcactgtagtatttgtttccacacaactctgaaactatccattggtcaatacatctcacaggctcattgcttattgactgcatacagGAGGGAAGGAACACCATATGGCCACACAACCCTCAAACAGGTTGGAGTTACTGTGTGATGATGCCTTCTTGGATCACCCAAACACCTGAAACTGGTGTCA
- - - - - - - cactgta
- - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttat