1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaaaccccacccccatcgctcgcggttcttggtctcccagcgctcgcttcaccgcatttgctttgcttcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGCCTGCCCCGAGCCGCGCTGCTCACAAGCGACCGCGTCACGGCCGACGAC
species | Zea mays |
transcript | GRMZM2G092131_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|91048511|gb|EB158929.1|EB158929
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|89252045|gb|DY623831.1|DY623831
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|71441696|gb|DR831412.1|DR831412
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|101390617|gb|EB817243.1|EB817243
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|71771111|gb|DR969048.1|DR969048
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|71435233|gb|DR816283.1|DR816283
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|211084844|gb|FL280288.1|FL280288
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|211084845|gb|FL280289.1|FL280289
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|101398534|gb|EB821140.1|EB821140
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|93015506|gb|EB641026.1|EB641026
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|211084842|gb|FL280286.1|FL280286
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|76932735|gb|DV173138.1|DV173138
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|211084843|gb|FL280287.1|FL280287
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGEST: gi|149077854|gb|EE166581.2|EE166581
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
EST: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGG GAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
genomic: TCCTGCCTCGGCGGCTCCCTCGTCGTCGCCGACTTCCCCGACGCCGGCGGgtgaaacccc ... tcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCG
cggttcttggtctcccagcgctcgcttcaccgcatttgctttgcttcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGCCTGCCCCGAGCCGCGCTGCTCACAAGCGACCGCGTCACGGCCGACGAC
ctttgcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaccccacccccatcgctcgcggttcttggtctcccagcgctcgcttcaccgcatttgctttgcttcgatcgcagGAGGGGCCTCGCGGCGGCGCGTGACTTGCGGCGCGGGGAGCTGGTGTTGCGCCTGCCCCGAGCCGCGCTGCTCACAAGCGACCGCGTCACGGCCGACGAC
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