1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaccagtcagagtcggatttgtcggctgcccgacttcgggcttggttaggctggggattgctaaaactggtgtcgctctgtgtgagtttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
species | Zea mays |
transcript | GRMZM2G086971_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGG GGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAGGEST: gi|94477967|gb|EB706925.1|EB706925
genomic: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGGgtaaccagtc ... ttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAGG
EST: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGG GGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAGEST: gi|76012729|gb|DT939899.1|DT939899
genomic: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGGgtaaccagtc ... ttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
EST: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGG GGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
genomic: CTAGCGGCAGCGTTATGTCGTTCCTGTGCCCGCTCCTCAAACTCCTCGGGgtaaccagtc ... ttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
tggttaggctggggattgctaaaactggtgtcgctctgtgtgagtttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
tgctaaa putative branch site (score: 2)
taaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccagtcagagtcggatttgtcggctgcccgacttcgggcttggttaggctggggattgctaaaactggtgtcgctctgtgtgagtttgtgcgcagGGAGGCGATCCTTCGCAGCAACGGAACGACGTTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG