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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcactgttgtatataactcctttgctttttaataagtgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttatagagaaagaaaaaaataaaaaaaaatgaggcatgcatagtaacttaccttaccgttatggaaagGTTGGGACACAAATCAGTTCATGATAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAAT

Basic information

species Zea mays
transcript GRMZM2G080345_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080345_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 15
gtatgtgtcactgttgtatataactcctttgctttttaataagtgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttatagagaaagaaaaaaataaaaaaaaatgaggcatgcatagtaacttaccttaccgttatggaaagGTTGGGACACAAATCAGTTCATGATAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAAT
                                      ||  | | ||| |   |  |  |    || ||| ||      | | || | |||||  ||  |||         || | | |||  | | ||         |||   ||     ||||    |||||| ||||||||||||  |||||||| | | ||| ||| |||||||||||||||||||||||||||| |||||||||
------------------------------------gtatgtgcgcatgcctttagctcctgaaagtcacatta------tgcctgaaattcttgtttgattt-cgatttgtgacatacataggatataa---------catttcaatg---cttatatatatggacagGTTGGGACACCGATCAGTTCCTTACAGATATTTCAGAGGCTACTTTGGTTATGTCAAGTGTGGTTAAGAAT

upper sequence: GRMZM2G080345_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 3'ss of exon 15
gtatgtgtcactgttgtatataactcctttgctttttaataagtgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttatagagaaagaaaaaaataaaaaaaaatgaggcatgcatagtaacttaccttaccgttatggaaagGTTGGGACACAAATCAGTTCATGATAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAAT-----------------------------
                                      ||  | | ||| |   |  |  |    || ||| ||      | | || | |||||  ||  |||         || | | |||  | | ||         |||   ||     ||||    |||||| ||||||||||||  |||||||| | | ||| ||| |||||||||||||||||||||||||||| |||||||||                             
------------------------------------gtatgtgcgcatgcctttagctcctgaaagtcacatta------tgcctgaaattcttgtttgattt-cgatttgtgacatacataggatataa---------catttcaatg---cttatatatatggacagGTTGGGACACCGATCAGTTCCTTACAGATATTTCAGAGGCTACTTTGGTTATGTCAAGTGTGGTTAAGAATGTGAGTTGAATTAATAATATGTTGCCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaataaaaaaaaatgaggcatgcatagtaacttaccttaccgttatggaaagGTTGGGACACAAATCAGTTCATGATAGACATTGCAGAGGCTACTTTGGTTATGTCAAGTGTAGTTAAGAAT
     ataaaaaaaaatga  TA-rich tract