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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtacagtttttagtgaatcagagcaataagtttttattttttgaaactgaatcagaataataagttgatttagagtccatcacatgttaaacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG

Basic information

species Zea mays
transcript GRMZM2G066885_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066885_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g42890.1 (Oryza sativa), 3'ss of exon 1
tgtacagtttttagtgaatcagagcaataagtttttattttttgaaactgaatcagaataataagttgatttagagtccatcacatgtt-aaacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
  ||    |||   |    |  |  | ||    || |   |   |   |  || ||  |   || | | ||     |   ||  ||||| | |||||||||||||||||||||||||||||||| || ||||| ||| | ||| | ||||
-ctaatcatttgcatattccttactactagtaattcaggatactactgtacattagcgtttcaaatcggttgcccatatctctaatgttgagacattgcagGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCAGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211288140|gb|FL278509.1|FL278509
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|211288139|gb|FL278508.1|FL278508
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|211055163|gb|FK977534.1|FK977534
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|148965066|gb|EC906072.2|EC906072
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|50323144|gb|CO518270.1|CO518270
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|211055161|gb|FK977532.1|FK977532
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|211288138|gb|FL278507.1|FL278507
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|148946110|gb|EC891404.2|EC891404
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
EST: gi|76287729|gb|DV027297.1|DV027297
EST:     TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAAC                         GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGGCCACCAACAAGAACCTCATCTTCAACgtgggtacta ... aacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgaatcagaataataagttgatttagagtccatcacatgttaaacattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG
                  agttgat  putative branch site (score: 5)
           aataataagttgattt  TA-rich tract