1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcaagttaaccatttatttggtctgtacaattttagtgaatcagaataataagttcatttacagcttttaagagtccaccacatgtttaatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
species | Zea mays |
transcript | GRMZM2G060357_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|8577184|gb|BE129821.1|BE129821
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|148938242|gb|EC882533.2|EC882533
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211354978|gb|FL245103.1|FL245103
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|60354340|gb|DN221313.1|DN221313
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211275486|gb|FL301567.1|FL301567
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273679|gb|FL301561.1|FL301561
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|32866290|gb|CF005972.1|CF005972
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273672|gb|FL301554.1|FL301554
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211275485|gb|FL301566.1|FL301566
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273675|gb|FL301557.1|FL301557
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273682|gb|FL301564.1|FL301564
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|28187673|gb|CB179283.1|CB179283
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|32865638|gb|CF005320.1|CF005320
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|149009145|gb|EE041281.2|EE041281
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273676|gb|FL301558.1|FL301558
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCG-CATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211352577|gb|FL245095.1|FL245095
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|1366564|gb|W59826.1|W59826
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: AAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211354976|gb|FL245101.1|FL245101
genomic: AAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCG-CATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|148959552|gb|EC905522.2|EC905522
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|148941514|gb|EC886445.2|EC886445
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211352579|gb|FL245097.1|FL245097
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211275490|gb|FL301571.1|FL301571
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|50323464|gb|CO518590.1|CO518590
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211352575|gb|FL245093.1|FL245093
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273673|gb|FL301555.1|FL301555
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211275484|gb|FL301565.1|FL301565
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|149106897|gb|EE188797.2|EE188797
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|71436474|gb|DR817524.1|DR817524
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211273674|gb|FL301556.1|FL301556
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|22472656|gb|BU037136.1|BU037136
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|149080500|gb|EE169531.2|EE169531
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|12047248|gb|BF729387.1|BF729387
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|148994879|gb|EE034279.2|EE034279
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|87156548|gb|DY401337.1|DY401337
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211354977|gb|FL245102.1|FL245102
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211352580|gb|FL245098.1|FL245098
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|148957898|gb|EC904053.2|EC904053
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211275489|gb|FL301570.1|FL301570
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAGEST: gi|211352576|gb|FL245094.1|FL245094
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
EST: TCCGCGGCGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAAC GTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
genomic: TCCGCGGTGGGCTCGCCATCGAGTCCACCAACAAGAACCTCATCTTCAACgtgagtactc ... aatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
gaataataagttcatttacagcttttaagagtccaccacatgtttaatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
gtttaat putative branch site (score: 216)
acatgtttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaagttaaccatttatttggtctgtacaattttagtgaatcagaataataagttcatttacagcttttaagagtccaccacatgtttaatattgcagGTTCACCCTGTTCTTATGCTTATCGGTTATGTTATTATCGGCGGTGAAG
- - - - - - - - - - - - ctgtaca
- - - - - - - - - - - - - - - - - - -gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaca