Sequence
atgc intronic sequence ATGC exonic sequence...tcttatcggccatggtccaaaaggaagcccatactatcataaaacaaactttgcagtatcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCAGCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G052206_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA20G37360.1 (Glycine max), 3'ss of exon 6
------------------------------------------------------------------tcttatcggccatggtccaaaaggaagcccatactatcataaaacaaactttgcagt-atcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCA---GCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
|| | | | | | || | || | || || | | ||| | | | | | ||| | || | ||| | | ||||| | | | || ||||||||||| |||||||||||||| |||||||| ||||| |||||| ||||||| | |||| | ||||||| |||| |
gtatgttaaagaaatttacttctattgtttgatgcctttgtactgcttctatccttctaataaaattcatttttgtt-ttttataattgaaaatctgtataattgtgattgaaagtataaaattaatgttgattaaaatttgctgcaatgatttcatgt-gtaacagAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTACCTCCACCACATGAAGATGGACAGCTTGGCTTTCCTTTGGGATCTTCTA---
upper sequence: GRMZM2G052206_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA03G40330.1 (Glycine max), 3'ss of exon 6
tcttatcggcc-atggtccaaaaggaagcccatactatcataaaacaaactttgcagtatcactgacttgtgcttatccttttttt----tttgtcttaccacagAAACGAAGGTTCGTCACTCATGCA---GCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
| | || | ||| | ||| | | || |||| || | | | ||| | | | || | ||| | | ||||| | || | | ||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||| |||||
----actgatttattttacaatacaaagtatctgc-atgataatgcatccagtcaaaactcaaaagtaaagattaaatttgttactatgatttcttctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCAC---
upper sequence: GRMZM2G052206_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA19G42960.1 (Glycine max), 3'ss of exon 5
-tcttatcggccatggtc---caaaaggaagcccatactatcataaaacaaactttgcagtatcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCA---GCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
||| || | | | ||| || ||| || | || | | || | | || | | || || || | | | ||| | | ||||| | || | | ||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||||| | ||||| | |||||
ttctaatgaactcttattttacaatagaaagtatatgc-atgaatatgcatccagt-caaaagtaaaga-ttaaatttgttactatgatttc-ttgtgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGCGAAAAGTTTCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTAGGATCTTCAC---
upper sequence: GRMZM2G052206_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G30030.1 (Glycine max), 3'ss of exon 6
----------------------------------------------------------------tcttatcggccatggtccaaaaggaagcccatactatcataaaacaaactttgcag-tatcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCA---GCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
| || | | | | | || | || | | | ||| | | | || | ||| | || | ||| | | ||||| | | | || ||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||| | |||| | ||||||| |||| |
gtatgttaaagaaatttacttctattgttttatgcctttgaactgctgctttccttctaataaaattcattatcatttttattattgaaaatctgtatagttgtgattgaaagtataaaactaacgttgattaaaatttgctgcaatgatttcatgt-gtaacagAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATGAAGATGGACAGCTTGGCTTTCCTTTGGGATCTTCTA---
upper sequence: GRMZM2G052206_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv05s0020g01890.t01 (Vitis vinifera), 3'ss of exon 6
tcttatcggccatggtccaaaaggaagcccat-actatcataaaacaaac-tttgcagtatcactgacttgtgcttat-ccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCA---GCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
| | ||| ||| | | | | | | | | | | ||| ||| | || || | | ||| | | | | | ||||| ||| | | | ||||||||| || ||||||||||| |||||||| ||||||||||| || ||||| | |||| ||| |||| |||||
tttcatca--tgtggctccatataattttgttgatcaagttggttctgatacttgtagt-ttgtagattttgattgctgtcttatatctccatttctaaacagAGGCGACGTCTAATAACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCCCCACACCAGGATGGAACCCTTGGCTACCCATTGGGTTCTTCAC--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaactttgcagtatcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCAGCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
cttgtgcttatccttt CT-rich tract
ttatcctttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttatcggccatggtccaaaaggaagcccatactatcataaaacaaactttgcagtatcactgacttgtgcttatccttttttttttgtcttaccacagAAACGAAGGTTCGTCACTCATGCAGCTAAGAGCAAGAGCGAAAAGTTCCCTCCCCCACATCAAGATGGTGCGGTTGGTGTCCCTTTGGACACTTCAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG