1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ccacccgcgatgatggcggcggcggcgatctccggctccagcggccacctcgtcgtctcctccccccgcttcaggcagccgctcacgctcccttctcgcagcggtcgcccaatcgccgccgCCGCCTCGGCCGTGGCCCGCGGCGGGGTCGCGGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATG
species | Zea mays |
transcript | GRMZM2G046748_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCG CEST: gi|211460301|gb|FL343033.1|FL343033
genomic: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCGccacccgcga ... atcgccgccg-
EST: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCG CEST: gi|211460301|gb|FL343033.1|FL343033
genomic: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCGccacccgcga ... atcgccgccg-
EST: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCG CEST: gi|211460301|gb|FL343033.1|FL343033
genomic: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCGccacccgcga ... atcgccgccg-
EST: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCG CEST: gi|211460301|gb|FL343033.1|FL343033
genomic: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCGccacccgcga ... atcgccgccg-
EST: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCG C
genomic: ACCCATCCGGGTCACTGGCTCACTGACACCGCGCCCCAATCACGCGCGCGccacccgcga ... atcgccgccg-
cgcttcaggcagccgctcacgctcccttctcgcagcggtcgcccaatcgccgccgCCGCCTCGGCCGTGGCCCGCGGCGGGGTCGCGGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATG
cgctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacccgcgatgatggcggcggcggcgatctccggctccagcggccacctcgtcgtctcctccccccgcttcaggcagccgctcacgctcccttctcgcagcggtcgcccaatcgccgccgCCGCCTCGGCCGTGGCCCGCGGCGGGGTCGCGGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CCGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGCCGCCG