Sequence
atgc intronic sequence ATGC exonic sequencegtcctcttacctctcgcccctccccttgtgctctctgtgcgagcactccggttgcttgttgggtttgccttgttctgggtggctgggtctagggctgacccaaccgctgggattcagtgggttgctttattgcttctgattaggcttacggtcgtgctccgcagTTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044011_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 3'ss of exon 1
--gtcctcttacctctcgcccctccccttgtgctctctgtgcgagcactccggttgcttgttgggtttgccttgttctgggtggctgggtctagggctga--cccaaccgctgggattcagtgggttgctttattgctt--ctgattaggctta--cggtcgtgctc-cgcagTTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG
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gtgtgaaccctcccctc-ccctccccatctcgctctccgtttgatcgct-----tgc--actaggtctagtgttgtttgggtttgggggtacggtggtgatccccttttgtgggggttgtgtggttcg-tgtgctgattggatgacttagatcgatttattgtgaaagcgcagCTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89251335|gb|DY623121.1|DY623121EST: TGAAGATCGTCCACCGCGACCTCGTTCGCAACGGGCCTGGCTCCGTCAAG TTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCC
genomic: TGAAGATCGTCCACCGCGACCTCGTTCGCAACGGGCCTGGCTCCGTCAAGgtcctcttac ... tgctccgcagTTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggattcagtgggttgctttattgcttctgattaggcttacggtcgtgctccgcagTTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG
ggcttac putative branch site (score: 3)
tttatt TA-rich tract