1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtattttccccttccattcgtttacagctcgatccccaaaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
species | Zea mays |
transcript | GRMZM2G038606_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533726|gb|FL071650.1|FL071650
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCC-ATGEST: gi|211536731|gb|FL071660.1|FL071660
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533729|gb|FL071653.1|FL071653
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: CCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077444|gb|FL076220.1|FL076220
genomic: CCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|211077445|gb|FL076221.1|FL076221
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077443|gb|FL076219.1|FL076219
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|78107776|gb|DV526194.1|DV526194
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077441|gb|FL076217.1|FL076217
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|211536732|gb|FL071661.1|FL071661
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|94474355|gb|EB703313.1|EB703313
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: CTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533731|gb|FL071655.1|FL071655
genomic: CTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|32868742|gb|CF008424.1|CF008424
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211074699|gb|FL076204.1|FL076204
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211074704|gb|FL076209.1|FL076209
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211074701|gb|FL076206.1|FL076206
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|31358015|gb|CD442372.1|CD442372
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533734|gb|FL071658.1|FL071658
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533732|gb|FL071656.1|FL071656
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|5343007|gb|AI795312.1|AI795312
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|89252869|gb|DY624655.1|DY624655
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077437|gb|FL076213.1|FL076213
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|32804245|gb|CD956481.1|CD956481
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: GATCCTGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|84970052|gb|DW468427.1|DW468427
genomic: GATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: CCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077438|gb|FL076214.1|FL076214
genomic: CCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077436|gb|FL076212.1|FL076212
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533730|gb|FL071654.1|FL071654
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211074703|gb|FL076208.1|FL076208
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211536733|gb|FL071662.1|FL071662
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533727|gb|FL071651.1|FL071651
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAAACCGCCCAGGGGCA-CCCATGEST: gi|211074702|gb|FL076207.1|FL076207
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|78115516|gb|DV533904.1|DV533904
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: CCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533728|gb|FL071652.1|FL071652
genomic: CCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211536730|gb|FL071659.1|FL071659
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211533733|gb|FL071657.1|FL071657
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077440|gb|FL076216.1|FL076216
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCEST: gi|211077434|gb|FL076210.1|FL076210
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGC
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211074700|gb|FL076205.1|FL076205
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|9952507|gb|BE639090.1|BE639090
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211077442|gb|FL076218.1|FL076218
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|78115517|gb|DV533905.1|DV533905
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGEST: gi|211536735|gb|FL071664.1|FL071664
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATGEST: gi|76927712|gb|DV171333.1|DV171333
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
aaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
gtctgat putative branch site (score: 4)
ttttgttctt putative PPT
aatattttgttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtattttccccttccattcgtttacagctcgatccccaaaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
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