1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatcttttcacaatctttaggaccaatgttttatgaatttgatgattggataaatgggtaatccttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAATGGCTCTGGTTCAGCATCCTGTGGTGAACTGCAGCTGCAGGGATGGAA
species | Zea mays |
transcript | GRMZM2G036534_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAEST: gi|93013412|gb|EB638932.1|EB638932
genomic: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
EST: GGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAEST: gi|71444183|gb|DR825233.1|DR825233
genomic: GGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
EST: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAEST: gi|74236968|gb|DT644882.1|DT644882
genomic: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
EST: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAEST: gi|71431981|gb|DR813031.1|DR813031
genomic: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
EST: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAEST: gi|31353134|gb|CD437491.1|CD437491
genomic: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
EST: GGGTTGGGTACACCATCACGACTGATGCTCTCGATCAGCTCTACNNNNNN NTTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
genomic: GGGTTGGGTACACCATCACGACTGATGCCCTCGATCAGCTCTACAAAAAAgtgagatctt ... ttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCA
ggaccaatgttttatgaatttgatgattggataaatgggtaatccttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAATGGCTCTGGTTCAGCATCCTGTGGTGAACTGCAGCTGCAGGGATGGAA
atttgat putative branch site (score: 323)
tccttttttgc putative PPT
aatgttttatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatcttttcacaatctttaggaccaatgttttatgaatttgatgattggataaatgggtaatccttttttgcagATTAAGTCAAAGGGGGTTACAATGACAGCACTGTTGGCTAAGGCGACGGCAATGGCTCTGGTTCAGCATCCTGTGGTGAACTGCAGCTGCAGGGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA