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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggtgtttcttaggcatagtcgcatagagacttatttctgatgtaaattctggttactcgtgttgttttctaatcttactttgatctgtctcattatagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGACATGTTGTTCCATGCAACAGGCTCCACCACCGGCATGGCCTGGGCGAGC

Basic information

species Zea mays
transcript GRMZM2G036290_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036290_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 3'ss of exon 1
gtggtgtttcttaggcatagtcgcatagagacttatttctgatgtaaattctggttactcgtgttgttttc-----ta-atcttactttgatctgtctcattatagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGACATGTTGTTCCATGCAACAGGCTCCACCACCGGCATGGCCTGGGCGAGC
           |  ||| ||     |||  || ||| | ||   | ||   || ||||| ||  | |||||     || |||||| ||||       | |||  ||||||  |  ||||||||| || || || | ||||  |||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
-----aacgagttagcagagagttgtaggcacgtatatatgcc-tgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattctggttactcgtgttgttttctaatcttactttgatctgtctcattatagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGACATGTTGTTCCATGCAACAGGCTCCACCACCGGCATGGCCTGGGCGAGC
                                        tctgtctc  CT-rich tract
                     ttttctaat  TA-rich tract