1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagatgcaatttctcccttttcttcctgtcgggcggagatagtagtatattcttcgaggaaacctaggtgattgcaatgtcgttttgatgatgatgattcccgaccattttatctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATCATCCGATGGGGTCTTCACCATCTCCTCCCCGCTCCGGCTGGATACTCT
species | Zea mays |
transcript | GRMZM2G035150_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211442448|gb|FL216159.1|FL216159
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211013809|gb|FL029070.1|FL029070
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211013807|gb|FL029068.1|FL029068
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|50324082|gb|CO519208.1|CO519208
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|71427954|gb|DR809004.1|DR809004
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|30591321|gb|CD052314.1|CD052314
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|50331812|gb|CO526938.1|CO526938
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211425221|gb|FL005414.1|FL005414
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|74235679|gb|DT643593.1|DT643593
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|71449152|gb|DR830202.1|DR830202
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211013810|gb|FL029071.1|FL029071
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211013811|gb|FL029072.1|FL029072
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|87156327|gb|DY401116.1|DY401116
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|71427181|gb|DR808231.1|DR808231
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|22542326|gb|BU092764.1|BU092764
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|76291810|gb|DV031378.1|DV031378
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|50327717|gb|CO522843.1|CO522843
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211013808|gb|FL029069.1|FL029069
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|31628099|gb|CD526441.1|CD526441
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|76289427|gb|DV028995.1|DV028995
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211442449|gb|FL216160.1|FL216160
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|26559396|gb|CA831631.1|CA831631
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: TCCATCATCCCAAGCTTTCTTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATEST: gi|211442451|gb|FL216162.1|FL216162
genomic: TCCATCATCCCAAGC-TTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
EST: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAA GGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
genomic: ATCCATCATCCCAAGCTTCCTTTCTGTCTCCTCTTCATCCATCTCCACAAgtaagatgca ... atctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACAT
ggtgattgcaatgtcgttttgatgatgatgattcccgaccattttatctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATCATCCGATGGGGTCTTCACCATCTCCTCCCCGCTCCGGCTGGATACTCT
ttttgat putative branch site (score: 4)
ttttatct putative PPT
attttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgcaatttctcccttttcttcctgtcgggcggagatagtagtatattcttcgaggaaacctaggtgattgcaatgtcgttttgatgatgatgattcccgaccattttatctgcacagGGATAATCAAGGAAGGAAGGCCATGGTTTTGTTCGAACTTGACCCGGACATCATCCGATGGGGTCTTCACCATCTCCTCCCCGCTCCGGCTGGATACTCT
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