1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
species | Zea mays |
transcript | GRMZM2G027105_T07 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438000|gb|DR819050.1|DR819050
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|211060877|gb|FK967412.1|FK967412
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTNTTCTCCGTTTTG GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGgtctaattcg ... gctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG TEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
EST: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTTGG T
genomic: ATTGCTTCTGGCTACTAGGCCAGCGCGCCTCGATTTTCTTCTCCGTTTT-Ggtctaattcg ... gctcttgcag-
ccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
tttcgctctt CT-rich tract
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG