Sequence
atgc intronic sequence ATGC exonic sequencegcaaatacgctttagatcccccattgcttctggctactaggccagcgcgcctcgattttcttctccgttttggtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G027105_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g39720.4 (Oryza sativa), 3'ss of exon 1
gcaaatacgctttagatcccccattgcttctggctactaggccagcgcgcctcgattttcttctccgttttggtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
| | | ||||||| | ||||||| | | || ||| | ||||| ||||| || | ||| | | |||| |||| ||||| || | | || | || | |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
----------------------------------------------gtgtgattgtgttcttctac-ttttggtttggt-----agagattgg--------tggtggtgcttg-ttgctttcctcagcgtggtggg----agtga----tttgtgttgaatacct-gcagGGTCGAGC-GCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAG---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15323605|gb|BI478889.1|BI478889EST: GGAGGGAACTCGCACGCGAAG GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
genomic: GGAGGGAACTCGCACGCGAAGgcaaatacgc ... gctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
EST:
gi|37419683|gb|CF647525.1|CF647525EST: CTCCACCGACCCCAAATCTCAAATCAGCGGGAGGGAACTCGCACGCGAAG GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
genomic: CTCCACCGACCCCAAATCTCAAATCAGCGGGAGGGAACTCGCACGCGAAGgcaaatacgc ... gctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
EST:
gi|211184031|gb|FL124016.1|FL124016EST: CTCCACCGACCCCAAATCTCAAATCAGCGGGAGGGAACTCGCACGCGAAG GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
genomic: CTCCACCGACCCCAAATCTCAAATCAGCGGGAGGGAACTCGCACGCGAAGgcaaatacgc ... gctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
tttcgctctt CT-rich tract
attgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaaatacgctttagatcccccattgcttctggctactaggccagcgcgcctcgattttcttctccgttttggtctaattcgtgaggaatttgggttttctcggtggagcttggttccgctccgccttggagtggatttcggtgacttctttgttcagattgtttcgctcttgcagGCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG