1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgggagccgcgtgccttctttctttcatctcccgagctggctctcgctcttgctccccctctgttttcgttaatggccgctcgatcggactgactgttcgcgatccacgaattgcagGGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTGTCTGGAGCCTCTCATCCGCCGAGTG
species | Zea mays |
transcript | GRMZM2G022972_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGACCAGCCCGGCGACAACCGCATGCGCCGCCTGCCGTCCTTGTCGAC GGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTGEST: gi|211163721|gb|FL223295.1|FL223295
genomic: GGCGACCAGCCCGGCGACAACCGCATGCGCCGCCTGCCGTCCTTGTCGACgtacgggagc ... cgaattgcagGGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTG
EST: GGCGACCAGCCCGGCGACAACCGCATGCGCCGCCTGCCGTCCTTGTCGAC GGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTG
genomic: GGCGACCAGCCCGGCGACAACCGCATGCGCCGCCTGCCGTCCTTGTCGACgtacgggagc ... cgaattgcagGGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTG
gttttcgttaatggccgctcgatcggactgactgttcgcgatccacgaattgcagGGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTGTCTGGAGCCTCTCATCCGCCGAGTG
gactgac putative branch site (score: 42)
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgggagccgcgtgccttctttctttcatctcccgagctggctctcgctcttgctccccctctgttttcgttaatggccgctcgatcggactgactgttcgcgatccacgaattgcagGGTGATTCGGGAGGCGATGATGCAGAAGGAGATGCAGAACCTGCTCAGGTGTCTGGAGCCTCTCATCCGCCGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG