1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atctggtgaaaatatccttctcttttcttgagccgtgctgctatgtgatatgatgagtgacaactccagaatactatattgataacactaatctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGCGTCTGGTCAACTATTTTGCTGCCCAATTCAATAAGCAGCTCGGTGATG
species | Zea mays |
transcript | GRMZM2G020040_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAG GTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGEST: gi|211200266|gb|FL092597.1|FL092597
genomic: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAGgtgaaatccc ... atctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATG
EST: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAG GTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGEST: gi|211200265|gb|FL092596.1|FL092596
genomic: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAGgtgaaatccc ... atctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATG
EST: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAG GTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGEST: gi|211200264|gb|FL092595.1|FL092595
genomic: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAGgtgaaatccc ... atctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATG
EST: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAG GTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATG
genomic: CATACAACGCCAAGGAGTTCGGAAAGACAGTGTCCGTTAACCAGTTCCAGgtgaaatccc ... atctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATG
tgatatgatgagtgacaactccagaatactatattgataacactaatctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGCGTCTGGTCAACTATTTTGCTGCCCAATTCAATAAGCAGCTCGGTGATG
cactaat putative branch site (score: 2)
tctctgc CT-rich tract
aatactatattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctggtgaaaatatccttctcttttcttgagccgtgctgctatgtgatatgatgagtgacaactccagaatactatattgataacactaatctctgcagGTTAAGGACGTAAGATGGAACTCTGAGCTTGGAGGCGTTCAAATGGAAATGCGTCTGGTCAACTATTTTGCTGCCCAATTCAATAAGCAGCTCGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC