1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcggttctgtaaaaatatttgtaattacctttattttttagctgattgctttgtttaaaaatgtctgtgaacatctcaaagaaaaaaatgttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACCTGCTGTTCTTTCTAAAGTAAGGAGCCTTGTTGAGAACGGAAAGTACCC
species | Zea mays |
transcript | GRMZM2G019673_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATAYAAATCYYAMTGCACEST: gi|50326552|gb|CO521678.1|CO521678
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACEST: gi|211162551|gb|FL361306.1|FL361306
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACEST: gi|211422894|gb|FL357529.1|FL357529
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACEST: gi|211475945|gb|FL359361.1|FL359361
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGARGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACEST: gi|211217978|gb|FL307288.1|FL307288
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACEST: gi|211382984|gb|FL317837.1|FL317837
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
EST: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACC ATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
genomic: AGGCGCCATGGTCTGGGGCTGCGTCGAATCTGAGAGGCTCCAGCTTAACCgtaagccacc ... gttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCAC
attgctttgtttaaaaatgtctgtgaacatctcaaagaaaaaaatgttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACCTGCTGTTCTTTCTAAAGTAAGGAGCCTTGTTGAGAACGGAAAGTACCC
agctgat putative branch site (score: 4)
tttgtttaaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcggttctgtaaaaatatttgtaattacctttattttttagctgattgctttgtttaaaaatgtctgtgaacatctcaaagaaaaaaatgttggtgcagATGACACTCTATGGACAGGTGGACCTGGTAATTATACAAATCCCAATGCACCTGCTGTTCTTTCTAAAGTAAGGAGCCTTGTTGAGAACGGAAAGTACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG