1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaattgctttatttatttacatctccattgcacgctgctggttgttggtgatttcttgtttttatctccaatcgactgaactttagttttcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG
species | Zea mays |
transcript | GRMZM2G017584_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|91057050|gb|EB167468.1|EB167468
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|31909681|gb|CD651040.1|CD651040
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAAGCTGEST: gi|32798166|gb|CD950402.1|CD950402
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAA-GCTG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAEST: gi|211059010|gb|FL008170.1|FL008170
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTA
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|149088813|gb|EE177940.2|EE177940
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|93014337|gb|EB639857.1|EB639857
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|30087147|gb|CB885355.1|CB885355
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|211059013|gb|FL008173.1|FL008173
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|211059011|gb|FL008171.1|FL008171
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|50333060|gb|CO528186.1|CO528186
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGEST: gi|31910413|gb|CD651411.1|CD651411
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
EST: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACG TTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
genomic: TTGGGCTTGCTGTATAGCACGGACCAGATCAAGGGTCGTCGTCGACCACGgtgagtgact ... tcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGG
ttggtgatttcttgtttttatctccaatcgactgaactttagttttcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG
ttttcttat CT-rich tract
atttcttgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaattgctttatttatttacatctccattgcacgctgctggttgttggtgatttcttgtttttatctccaatcgactgaactttagttttcttatacagTTTGAGGCTTGGCCATGCCTTTAAATATAGATATTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT