1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgtctctctctctcaaccctacccaacccaattcaatcagtgcactttatatggtactactatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
species | Zea mays |
transcript | GRMZM2G016561_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: T-GGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAG GATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAGEST: gi|78112623|gb|DV531017.1|DV531017
genomic: TGGGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAGgtctgtctct ... ctatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
EST: T-GGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAG GATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAGEST: gi|71426622|gb|DR807672.1|DR807672
genomic: TGGGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAGgtctgtctct ... ctatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
EST: T-GGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAG GATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
genomic: TGGGAAGAAGGTATATGCGGGGCTTTTATAACGATGTTGCTCGGCTGCAGgtctgtctct ... ctatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
aaccctacccaacccaattcaatcagtgcactttatatggtactactatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
actttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtctctctctctcaaccctacccaacccaattcaatcagtgcactttatatggtactactatctgcagGATGTGCGTAAAATATTCCCTCATTGCAGCTCAGATATGGAACCGGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA