1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cataagtcaactgtgatgtatccaatagatttgcatggagaattgcactttgtagttatgcacaggagcccaacgtttacatcttcaattaacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAA
species | Zea mays |
transcript | GRMZM2G015854_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACG GAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATEST: gi|71315019|gb|DR794128.1|DR794128
genomic: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACGgtgcgttccg ... aacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGAT
EST: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACG GAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATEST: gi|50326788|gb|CO521914.1|CO521914
genomic: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACGgtgcgttccg ... aacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGAT
EST: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACG GAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGAT
genomic: GGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTCGAGCTCCACGgtgcgttccg ... aacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGAT
cactttgtagttatgcacaggagcccaacgtttacatcttcaattaacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAA
aattaac putative branch site (score: 26)
ttcaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataagtcaactgtgatgtatccaatagatttgcatggagaattgcactttgtagttatgcacaggagcccaacgtttacatcttcaattaacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - -tgtgatg
- - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggagc