1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatgcagttttcttgttaataccaagcattctgccgtttcctattgagatagatattctgttactgatttttaccctagcttggtctcctctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG
species | Zea mays |
transcript | GRMZM2G006765_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|32907965|gb|CF012778.1|CF012778
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|32868978|gb|CF008660.1|CF008660
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCGGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|211179259|gb|FL010857.1|FL010857
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: CAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGCAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|78117775|gb|DV536162.1|DV536162
genomic: CAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|71315363|gb|DR794285.1|DR794285
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|6695747|gb|AW288825.1|AW288825
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|211179261|gb|FL010859.1|FL010859
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCATAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|211179263|gb|FL010861.1|FL010861
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAKCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|211179260|gb|FL010858.1|FL010858
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|12045697|gb|BF727836.1|BF727836
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: TTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|101383600|gb|EB813855.1|EB813855
genomic: TTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|22546788|gb|BU099099.1|BU099099
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|32865168|gb|CF004850.1|CF004850
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|32906739|gb|CF011552.1|CF011552
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCEST: gi|78179272|gb|DV549645.1|DV549645
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
EST: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGG TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
genomic: GCGTTCTCCGCAGGAGCGAGGAGGGCTCGCGGCAGCGGCAGGGTCTCCGGgtacgtcgtg ... ctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGC
gagatagatattctgttactgatttttaccctagcttggtctcctctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG
tactgat putative branch site (score: 450)
cttggtctcctctcct putative PPT
tgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgcagttttcttgttaataccaagcattctgccgtttcctattgagatagatattctgttactgatttttaccctagcttggtctcctctcctcctagTGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG
aatgcag
- - - - tttcttg
- - - - - - - - - - -ccaagca
- - - - - - - - - - - - - - ttctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact