Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccactgaggaacggatctggaatgtttagcttagctgtccacttgttcgttagggatgtttggactgacgcggttatttctttgcaattgcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT

Basic information

species Zea mays
transcript GRMZM2G002786_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002786_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g53520.2 (Oryza sativa), 3'ss of exon 1
gccactgaggaacggatctggaatgtttagcttagctgtccacttgttcgttagggatgtttggactgacgcggttatttctttgcaatt------gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT
 | |    | ||  |||||||||| |||| || | || ||   || |||      | |||||||| | |   | ||  || |||| |  |      | ||||||||| || ||||| || ||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||||| || |||||| | ||||||||||| ||
ccgatcttgaaatagatctggaatattta-ctcacctatctgtttattct-----ggtgtttggagttatttgattgattgtttgtacataaatgcgtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGCCGGAGCCACGGCCATCTGGCTACTCTTCGAGATCATGGAGTACCACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211478243|gb|FL012837.1|FL012837
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|28909442|gb|CB331814.1|CB331814
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333642|gb|FL012809.1|FL012809
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335816|gb|FL012828.1|FL012828
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478248|gb|FL012842.1|FL012842
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GC-GATTCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|94477185|gb|EB706143.1|EB706143
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|74244054|gb|DT651968.1|DT651968
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|4753433|gb|AI657343.1|AI657343
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478244|gb|FL012838.1|FL012838
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCSAATCTTGTCCTATGGAGGAACAAGANGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|94480310|gb|EB709268.1|EB709268
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335813|gb|FL012825.1|FL012825
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCSSATNCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|211478238|gb|FL012832.1|FL012832
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCS-ATTCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|211478239|gb|FL012833.1|FL012833
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333645|gb|FL012812.1|FL012812
EST:     CTCTTCGGCCGGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: CTCTTCGGCCG-CGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335818|gb|FL012830.1|FL012830
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148997316|gb|EE035811.2|EE035811
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478242|gb|FL012836.1|FL012836
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335808|gb|FL012820.1|FL012820
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCNAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333648|gb|FL012815.1|FL012815
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|78088623|gb|DV517016.1|DV517016
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|88757596|gb|DY541737.1|DY541737
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333641|gb|FL012808.1|FL012808
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCS-ATNCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|211478246|gb|FL012840.1|FL012840
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAG-                         CCG-CSATTNCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACT
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGA-T-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACT
EST: gi|148982478|gb|EE028331.2|EE028331
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478250|gb|FL012844.1|FL012844
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478252|gb|FL012846.1|FL012846
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCS-ATTCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|15208958|gb|BI430842.1|BI430842
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478241|gb|FL012835.1|FL012835
EST:     CTCTTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: CTC-TTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|149072488|gb|EE160766.2|EE160766
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|28909435|gb|CB331812.1|CB331812
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|149103132|gb|EE288502.2|EE288502
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335807|gb|FL012819.1|FL012819
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCSGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|78088622|gb|DV517015.1|DV517015
EST:     GCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: GCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335817|gb|FL012829.1|FL012829
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCS-ATTNCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACT
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT--CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACT
EST: gi|211335805|gb|FL012817.1|FL012817
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148946603|gb|EC891862.2|EC891862
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|89764135|gb|DY691052.1|DY691052
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335819|gb|FL012831.1|FL012831
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148958638|gb|EC904893.2|EC904893
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|149017012|gb|EE045663.2|EE045663
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|113703563|gb|EE681067.1|EE681067
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|60397846|gb|DN230662.1|DN230662
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333649|gb|FL012816.1|FL012816
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478247|gb|FL012841.1|FL012841
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCC-ATTCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|211333644|gb|FL012811.1|FL012811
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335815|gb|FL012827.1|FL012827
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148965585|gb|EE016418.2|EE016418
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|91052894|gb|EB163312.1|EB163312
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|40334051|gb|CK368121.1|CK368121
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478240|gb|FL012834.1|FL012834
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|76013338|gb|DT940508.1|DT940508
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333639|gb|FL012806.1|FL012806
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|9733698|gb|BE512450.1|BE512450
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTG
EST: gi|211333647|gb|FL012814.1|FL012814
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148954864|gb|EC900341.2|EC900341
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|76285736|gb|DV025304.1|DV025304
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335810|gb|FL012822.1|FL012822
EST:     TCTCTTCGGCCGCGATAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211299050|gb|FK946445.1|FK946445
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCC-ATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211333646|gb|FL012813.1|FL012813
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCS-ATTCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGAT-CTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTC
EST: gi|78078652|gb|DV507064.1|DV507064
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|78074112|gb|DV502546.1|DV502546
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211478245|gb|FL012839.1|FL012839
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335811|gb|FL012823.1|FL012823
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|78078655|gb|DV507067.1|DV507067
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|148930882|gb|EC873320.2|EC873320
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         CCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
EST: gi|211335812|gb|FL012824.1|FL012824
EST:     TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGC                         C-GCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG
genomic: TCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 448

GGGTCTTCTTCGGCGTCGGCGACGGAGGCCATGAAAGCCAAGATCTACCGTCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 451

GGGTCTTCTTCGGCGTCGGCGACGGAGGCCATGAAAGCCAAGATCTACCGTCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 499

GGGTCTTCTTCGGCGTCGGCGACGGAGGCCATGAAAGCCAAGATCTACCGTCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 346

GGGTCTTCTTCGGCGTCGGCGACGGAGGCCATGAAAGCCAAGATCTACCGTCTCTTCGGCCGCGAGAGGCCCGTCCACTCTGTCCTCGGCGGCGGCAAGCgtaagccatc ... gcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgttagggatgtttggactgacgcggttatttctttgcaattgcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT
                  gactgac  putative branch site (score: 346)
                             ttatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccactgaggaacggatctggaatgtttagcttagctgtccacttgttcgttagggatgtttggactgacgcggttatttctttgcaattgcgcttgcagCCGCCGATCTTGTCCTATGGAGGAACAAGAAGATCTCAGGCGGGGTACTCGCTGGTGCCACGGCCATCTGGCTCCTGTTCGAGGTTATGGAGTACCATCT

gccactg
- - - - - - - - - - - - - - - - - gctgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacgc