Sequence
atgc intronic sequence ATGC exonic sequence...aagtatctcatgtataccatcttttcagatcattgaactgaataagctgatccgatttgctgactgctcctctcaccactcaaaatttgtgatggaacagGACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCCAATATCTGTGCTTCCACCGGTGCTAGAGTTGTCAAGAGAAAAATAGAAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211276130|gb|FL226493.1|FL226493EST: CAGTCTCTTGGGATCCTTTCTATCAGCACAAGACGTTTAAATATTCTAAG GACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCC
genomic: CAGTCTCTTGGGATCCTTTCTATCAGCACAAGACGTTTAAATATTCTAAGgtgcagttct ... gatggaacagGACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCC
EST:
gi|211276131|gb|FL226494.1|FL226494EST: CAGTCTCTTGGGATCCTTTCTATCAGCACAAGACGTTTAAATATTCTAAG GACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCC
genomic: CAGTCTCTTGGGATCCTTTCTATCAGCACAAGACGTTTAAATATTCTAAGgtgcagttct ... gatggaacagGACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctgatccgatttgctgactgctcctctcaccactcaaaatttgtgatggaacagGACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCCAATATCTGTGCTTCCACCGGTGCTAGAGTTGTCAAGAGAAAAATAGAAG
tcaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtatctcatgtataccatcttttcagatcattgaactgaataagctgatccgatttgctgactgctcctctcaccactcaaaatttgtgatggaacagGACCATCAAGCCTATGAAGAGGTTGATCACTATGCTAAGAGGAAAGCAGCCAATATCTGTGCTTCCACCGGTGCTAGAGTTGTCAAGAGAAAAATAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - catgtat
- - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - -gctgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac