1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgactgtttccgtttcccaactctcttcaactattccgcgccgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaatccgtgatgttctgatttttgaaagctctgctactgaagacacttaagttttgtttgcttgttcatgtttcgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGAAGCTGTGCGACCGAAACTTCGGCATTGGCGCCGACGGTGTTATCTTCG
species | Zea mays |
transcript | AC182617.3_FGT001 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|148932662|gb|EC876592.2|EC876592
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|149014406|gb|EE044007.2|EE044007
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|74235623|gb|DT643537.1|DT643537
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|71757461|gb|DR955398.1|DR955398
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|148930368|gb|EE284809.2|EE284809
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|71432546|gb|DR813596.1|DR813596
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGEST: gi|50325885|gb|CO521011.1|CO521011
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
EST: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATG GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
genomic: GCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgt ... cgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCG
ctctgctactgaagacacttaagttttgtttgcttgttcatgtttcgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGAAGCTGTGCGACCGAAACTTCGGCATTGGCGCCGACGGTGTTATCTTCG
ttaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgactgtttccgtttcccaactctcttcaactattccgcgccgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaatccgtgatgttctgatttttgaaagctctgctactgaagacacttaagttttgtttgcttgttcatgtttcgattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCCGAGGAGGCTGCGAAGCTGTGCGACCGAAACTTCGGCATTGGCGCCGACGGTGTTATCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG