Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatatcctgtatcttcaagcaaatgctggctgtgacaggagattgtttctgcatcatttaatcctttggtatggtaatattgctttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCAGAAATTTTCCTTTGCAGTCGGTTTTGGCAGAGAAAAAGTCCAAATGAAT

Basic information

species Vitis vinifera
transcript Vv19s0093g00560.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33401742|gb|CF207369.1|CF207369
EST:     TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG                         GTGCTTTACCA
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCA
EST: gi|110416701|gb|EC982698.1|EC982698
EST:     GTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG                         GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
genomic: GTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: gi|34546278|gb|CF514510.1|CF514510
EST:     TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG                         GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: gi|34544722|gb|CF512954.1|CF512954
EST:     TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG                         GTGCTTTCCCACCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTCCCA
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
EST: gi|33401822|gb|CF207449.1|CF207449
EST:     TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGG                         GTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA
genomic: TAGTAGATGTTTCAGTGACGGCGATATCTTCCATGGAACAGTAACTCTGGgtatgttata ... ttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattgtttctgcatcatttaatcctttggtatggtaatattgctttacttgtagGTGCTTTACCAGCCAGGAATTGAGATCAAAAGCTGAGTCCAAATCTTGCCAGAAATTTTCCTTTGCAGTCGGTTTTGGCAGAGAAAAAGTCCAAATGAAT
                atttaat  putative branch site (score: 4)
                                           ctttactt  putative PPT
             atcatttaat  TA-rich tract