1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttgcctccattaggccaaaaagaccgagtctttttaagtaatgttagcatagcagctcttcacattttttttttctaatggttgtgcgtattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTGGCCATCGAAGAACCCTTTATGGTTACCACAATAGGCGCTTACATATAT
species | Vitis vinifera |
transcript | Vv19s0085g01190.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAG GCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTEST: gi|110364349|gb|EC923945.1|EC923945
genomic: ATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAGgtatgaacag ... tattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATT
EST: ATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAG GCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTEST: gi|28963935|gb|CB342968.1|CB342968
genomic: ATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAGgtatgaacag ... tattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATT
EST: ACTAGATGAATCCCCCAGCGCCTTGGATGAAGCTAATGAG GCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATT
genomic: ACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAGgtatgaacag ... tattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATT
ttagcatagcagctcttcacattttttttttctaatggttgtgcgtattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTGGCCATCGAAGAACCCTTTATGGTTACCACAATAGGCGCTTACATATAT
ttctaat putative branch site (score: 2)
ttcacatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcctccattaggccaaaaagaccgagtctttttaagtaatgttagcatagcagctcttcacattttttttttctaatggttgtgcgtattttgcagGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTGGCCATCGAAGAACCCTTTATGGTTACCACAATAGGCGCTTACATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - gcctcca
- - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - -catagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg