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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgattctttgctcaaatgtttccatttcctgttgattcttagaataagtgcttgttcactcttaaatcatttttctttttctttagtggagacaatttatattgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG

Basic information

species Vitis vinifera
transcript Vv18s0001g10090.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G35780.1 (Glycine max), 3'ss of exon 9
gtattttgattctttgctc--aaatgtttccatttcctgttgattcttagaataagtgcttgttcactcttaaatcatttttctttttctttagtggagacaatttatattgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG
         |||||||     ||| | | | |        ||  |||       |||||| | || || || |   |   ||||             | | |  |||| ||  | ||  ||||| ||||| ||||||||||||||||||||||||||||||   |||||||| ||  |  | ||||||||| ||||||| |||||||||  |  |  |||||||||||
---------ttctttgaaagaaaaggatactagccttaactgtatct------gagtgctgggtctctttttatatacacttct------------aatatatattattttataatt-gattatgtagGTCCTCAAGGAAAGGATTGCTTGGCTTGAAGCAGTTAATGAGGATCTTCGATGTGAACTTCATGAATACCGTAGTAGATGCTCTACTGTAGAACAATGTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 9
gtattttgattctttgctcaaatgtttccatttcctgttgattcttagaataagtgcttgttcactcttaaatcatttttctttttctttagtggagacaatttatattgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG
            ||||   | |   ||  | |      |||||  ||   |||    |||   ||  | ||||  ||| | ||| || | | |  | | |||  || ||  |  |  ||||| ||||| || |||||||| |||||||||||||||||  | ||||| || || || || ||||||||| ||||||| |||||||||  | ||  ||||||| |||
-----------atttgtgtagagacttgtaata-----tgatt--tactttaa----ttgcaaacattgaaatggtttgtatttatcataaat--aaataatc-atcttataact-gattatgtagGTCCTTAAGGAAAGAATTGCTTGGCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCATGAATACCGTAGTAGATGCTCTATTGTAGAACAAAGTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA14G09390.1 (Glycine max), 3'ss of exon 9
-------------------------------------------------gtattttgattctttgctcaaatgtttccatttcctgt---tgattcttagaataagtgcttgttcactcttaaatcatttttctttttcttta-gtggagacaatttatat----tgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG
                                                  |||||    |  | | | |  ||    ||||  |||    |||||  |     | |  |||  |    ||| | |  |   ||| ||| |  |  |      ||| |||||    | |   |  || ||  |||| |||||||||||||||||||||||||||||  | |||||||| ||  |  | ||||||||| |||| || |||||||||  |  |  ||||||||| |
gtagctggtttctgttaaatctttggcaatgtcttgcatcaattttaatatatttcctataataggttag-tggcaacattaactggacatgatttatgacgcacgc-cttaattgtacttgagtgctgggtctctttttacatatacttctaatatatataattttataattgataatgcagGTCCTCAAGGAAAGGATTGCTTGGCTTGAAGCTGCTAATGAGGATCTTCGATGTGAACTTCATGAATATCGTAGTAGATGCTCTACTGTAGAACAATGCG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 9
gtattttgattctttgctcaaatgtttccatttcctgttgattcttagaataagtgcttgttcactcttaaatcatttttctttttctttagtggagacaatttatattgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG
            ||||   | |   ||  | |      |||||  ||   ||| ||| |    ||  | ||||  ||| | ||| || | | |  | | |||  || ||  |  |  ||||| ||||| || |||||||| ||| |||||||||||||  | ||||| || || || || ||||||||| ||||||| |||||||||| | ||  ||||||| |||
-----------atttgtgtagagacttataata-----tgatt--tactttaattgcat----acattgaaatggtttgtatttatcgtaaat--atataatc-atcttataact-gattatgtagGTCCTTAAGGAAAGAATTACTTGGCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCATGAATACCGTAGTAGATGCCCTATTGTAGAACAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatttttctttttctttagtggagacaatttatattgaagttcaattatatagGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTG
                          acaatttatattgaag  TA-rich tract