Sequence
atgc intronic sequence ATGC exonic sequence...atgtctattatcttctgtgactctgagaagtaagtctagcaaatttgtcttttatgtgaccaatattcccatatcaattatttatctttacctgaatcagGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09890.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G18330.1 (Glycine max), 3'ss of exon 9
atgtctattatcttctgtgactctgagaagtaagtctagcaaatttgtcttttatgtgaccaatat-tcccatatcaattatttatctttacctgaatcagGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGG
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aattatttcagcttaaatgtcacaactcaaaatgtcttttggtgtt-tctacaatggatatagtttgtgacatgtttggcatgtcattctttttctactagGCTATAGCAGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTCGGTATTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACCTTAAAG
upper sequence: Vv17s0000g09890.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G36580.1 (Glycine max), 3'ss of exon 9
-atgtctattatcttctgtgactctgagaagtaagtctagcaaatttgtcttttatgtgaccaatat-tcccatatcaattatttatctttacctgaatcagGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGG
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taattatgtcagcttaaatgtcacaactcaaaatgtcttttggtgtt-tctacaatggatatagtttgtgacatgtttggcatgcattctt-tttctactagGCTATAGCTGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTTGGCGTTCATAGTCTCTGTGCTAGGCAATTCAAAACATCACAAAAGTACCTTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcttttatgtgaccaatattcccatatcaattatttatctttacctgaatcagGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGG
tctttacct CT-rich tract
atatcaattatttatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtctattatcttctgtgactctgagaagtaagtctagcaaatttgtcttttatgtgaccaatattcccatatcaattatttatctttacctgaatcagGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGG
- - - - - -cttctgt
- - - - - - - - - gactctg
- - - - - - - - - - - - -agaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attccca