1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcatctctggtaagcaaactgtttctaaatgcaccatagtttaacatctggtctttttttttccttctgcaatattatgctatctgctcttcatatgcagTTTCCTCCTGAAAAATTTGTCAAAACATTGAAGCTAATGGAGCATCGCTATGGTGCCAAGGCCTTTGTGATGAGCAAGGACTGTAGCTTGCTGGCTTCAG
species | Vitis vinifera |
transcript | Vv16s0100g00160.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
atctggtctttttttttccttctgcaatattatgctatctgctcttcatatgcagTTTCCTCCTGAAAAATTTGTCAAAACATTGAAGCTAATGGAGCATCGCTATGGTGCCAAGGCCTTTGTGATGAGCAAGGACTGTAGCTTGCTGGCTTCAG
tctgctcttc CT-rich tract
tcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctctggtaagcaaactgtttctaaatgcaccatagtttaacatctggtctttttttttccttctgcaatattatgctatctgctcttcatatgcagTTTCCTCCTGAAAAATTTGTCAAAACATTGAAGCTAATGGAGCATCGCTATGGTGCCAAGGCCTTTGTGATGAGCAAGGACTGTAGCTTGCTGGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
tcatctc
- - - - - -aagcaaa
- - - - - - - - - ctgtttc
- - - - - - - - - - - - - - -tgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatc