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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatattcccatcactgcttgttataaagtttaatgttgacactgatatctatgtgtctgtccactttcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTGCTATTGCTCTTGCAACTGGTGAGTCATCAGATATAGTTAGTGAGGAACT

Basic information

species Vitis vinifera
transcript Vv16s0050g00600.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305216|gb|CB982010.1|CB982010
EST:     ATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
genomic: ATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
EST: gi|71862155|gb|DT011210.1|DT011210
EST:     TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCA-TTG                         GTTACACAAGACTGTTTCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
genomic: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcata ... tcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
EST: gi|110700815|gb|EE077801.1|EE077801
EST:     TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTG                         GTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
genomic: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcata ... tcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
EST: gi|30305280|gb|CB982074.1|CB982074
EST:     CTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
genomic: CTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaagtttaatgttgacactgatatctatgtgtctgtccactttcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTGCTATTGCTCTTGCAACTGGTGAGTCATCAGATATAGTTAGTGAGGAACT
                  cactgat  putative branch site (score: 3)
                                      tccactttc  putative PPT
       tttaatgtt  TA-rich tract