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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgatcaccagctcttagcttctctgttgctttagcatttgcacttgttttattttgttcaattttttatttcctgtaaaattgcactgtaaaagaaggctctattatcaccagcaataggaagttttatttatcaagttcattaaataaaatctattatgcagTTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAG

Basic information

species Vitis vinifera
transcript Vv12s0035g01350.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G28620.1 (Glycine max), 3'ss of exon 10
gtatgcgatcaccagctcttagcttctctgttgctttagcatttgcacttgttttattttgt-tcaattttttatttcctgtaaaattgcactgtaaaagaaggctctattatcaccagcaataggaagttttatttatcaagttcattaaataaaatctattatgcagTTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAG
                                |    | || ||| ||    | | |||||| | | ||| ||     |||| || |||  |||             ||||    | |  ||  || | |  || || | |  |       | | | | | || |||||||||||||||||||||||||| || || || |||    | |||| |||||| |||||| ||||||||
--------------------------------gtaaaaacagttgaacaccgtgtgttttgtattattttctttccagctgttaatttgtgctga-----------ttatttgtgctattaaatgggattcataattttaatat-----ggaaagagtttgttttgcagTTGGGTGGAAATGATGGCACCAGTGTTTTCTAAGAAGTCTTGGCAATGTGTATGGCATTTGATCCAG

upper sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G00290.1 (Glycine max), 3'ss of exon 8
gtatgcgatcaccagctcttagcttctctgttgctttagcatttgcacttgttttattttgt-tcaattttttatttcctgtaaaattgcactgtaaaagaaggctctattatcaccagcaataggaagttttatttatcaagttcattaaataaaatctattatgcagTTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAG---------------------------------
                                |    | || ||||||    | | | |||| | | ||| ||     |||| || | |  |||             || |    | |  ||  | || |  || || | |     ||  ||| || | | || |||||||||||||||||||||||||| || || || ||     | ||||  ||||| |||||| ||||||||                                 
--------------------------------gtaaaaacagttgcacaccgtgtgtcttgtattattttctttccagctgttaactcgtgctga-----------ttacttatgctattaaatgaaattcataattttaa----tatagaatgaa-tttgttttgcagTTGGGTGGAAATGATGGCACCAGTGTTTTCTAAAAAGTCTTGGCAGTGTGTATGGCATTTGATCCAGGTATGGATACTAAAACTGTGTAAATTTGGTATA

upper sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G18530.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgcgatcaccagctcttagcttctctgttgctttagcatttgcacttgttttattttgttcaattttt-tatttcctgtaaaattgcactgtaaaagaaggctctattatcaccagcaataggaagttttatttatcaagttcattaaataaaatctattatgcagTTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAG
                                                           |   |  ||||   || | | || ||||     || ||       |||| ||   |||              | |||   ||   | |  |  |||  |  ||  || || ||||||||||||||||||||||| ||||| |  || || ||| |||||   ||| ||||||| |||
----------------------------------------------------------gtaaacgcttttcgcatattccgtgaaatgttcttgaaa-------ctctctttctacc--------------tcattctccag--ttaacatgtaacttggatc-tgtagGTGGGTGGAAATGATGGCACCTGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGTATATGATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagcaataggaagttttatttatcaagttcattaaataaaatctattatgcagTTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAG
            aagttttatttatcaa  TA-rich tract