Sequence
atgc intronic sequence ATGC exonic sequence...tctggactgatgtatgatccataggttacacacaaagagcaatgtcatcagttcttttctttctctgtgtgattgtgtctcattttctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 9
--tctgg-actgatgtatgatccataggttacacacaaagagcaatgtcatcagttcttttctttctctgtgtgatt-gtgtctcattt-tctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
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catttgccactatcaaatatgccaaattctgttcatg----gttttgccat-acttttctgcaaatgggatgggattagtttttcacctctgctagtctttacagTGCAGCTTCAACACCATGCACGGCATCGCCTTCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCT
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G19970.1 (Glycine max), 3'ss of exon 9
---tctggactgatgtatgatccataggttacacacaaagagcaatgtcatcagttcttttctttctctgtgtgatt-gtgtctcattt-tctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
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tcatttgccactatcaaatatgccaatgctgttcatga----ttttgccat-acttttctgcaaatgacccgagattagtttttcacctctgctagtctttacagTGCAGCTTCAACATCATGCACGGCATCGCCTGCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCT
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 3'ss of exon 10
tctggactgatgtatgatccataggttacacacaaagagcaatgtcatcagttcttttctttctctgtgtgattgtgtctcattttctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
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----------gttagaatttctt--ctattccaatagcttatggtttccaatctttgcttctcaacaatcatctttgtttcgatatcact-ttgttgcagTGCAGCTTCAACACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGCTTGTCTTTGTACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcagttcttttctttctctgtgtgattgtgtctcattttctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
attttctcaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctggactgatgtatgatccataggttacacacaaagagcaatgtcatcagttcttttctttctctgtgtgattgtgtctcattttctcaattattgcagTGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCA
- - - ctgatgt
- - - - - - - - - ccatagg
- - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - -agcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctca