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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taactgttcaaaaaatgaactgaaaaaactgtaggattatttgtgagctttctttgttaattgtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG

Basic information

species Vitis vinifera
transcript Vv11s0037g00180.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g55140.1 (Oryza sativa), 3'ss of exon 8
--------------taactgttcaaaaaat--gaactgaaaaaactgtaggattattt--gtgagctttctttgttaattgtttggg-aataatgaaatcat----ctatgtggttgctt---cagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
              | | | |  |  ||||   | |  || | || |    ||  | |  ||  ||    ||   |||   | |  | | | |     | ||    |    || |||  |   ||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||||| || || ||||| ||| | || || ||||
gtaaatttaccactttattatgaatgaaattcaagcaaaacacacagccacatgctctaggtaggcacatttgaataaagttgtaagcagtgacatgctaatggagcctcatgcttgtatttgcagTTTGTGGATGAGAAGGTGCAGTGGATGCACATTGACATGGCCGGGCCAGTGTGGAACGACAAGAAGCGGGCGGCCACCGGATTCGGCGTCTCCACCCTGG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G178958_T01 (Zea mays), 3'ss of exon 9
---------------------------------------------------------------------------------------taactgttcaaaaaatgaactgaaaaaactgtaggattatttgtgagctttctttgttaattgtttgggaataatgaaatcatctatgtg-----gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
                                                                                       | |  | | || ||     |   | |      |   | |   |  ||  |||      | | ||   || || |      | | | |||       ||| | ||||| || ||||| ||||| ||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||| || || || || ||| |||| || ||||
gtacatttctgtttgtttttttcttttcttttgacacgcctaaatacattatgaaatttgatcacagcgataggaccattggagtggtgagagattaagaatccgccacgatagtgaacactttgacaggacagacttccagagcagtggtaacggcatgaacgccgcttttgtgtccctcccttgttgcagTTCGTCGACGACAAGGTCCAGTGGATGCACATCGACATGGCCGGGCCAGTGTGGAGCGACAAGAAGCGGGCCGCCACCGGGTTCGGCGTTTCCACCCTGG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G043893_T02 (Zea mays), 3'ss of exon 7
taactgttcaaaaaatgaactgaaaaaactgtaggattat-ttgtgagctttctttg--ttaattgtttgggaataatgaaatcatctatgtggt-tgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
  || |    |  || || ||   |            ||| ||   |   | |||||  || | || |   |  |  ||   |  ||| |   |  || | |||||||| || || ||||||||||||||||| |||||||| |||||  | || |||| | | ||||||||||| |  || || || ||  |  | || ||||
gtacagagagagcaacgaccttcgatttgcacgaacctatattaatatgctgctttgaattgactgctgttgtgttctgctctgttctgttctgcgtgttgcagTTTGTCGATGACAAGGTTCAGTGGATGCACATCGACATCGCCGGCACGGTCTGGAGCAACAAGAAGCGGGCGGGTACTGGCTTCGGAGTCACCACCCTGG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G22730.1 (Glycine max), 3'ss of exon 9
taactgttcaaaaaatgaactgaaa--aaactgtagga---ttatttgtgagctttctttgttaattgtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
   || |  ||| | |||  ||      |  |||  |    |||| ||    | |  | |     || | |   | |  |  ||  | | || | |||  | |||||||| |||||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||| ||||   |||||||||||||||  || | ||| |||
--gctttgtaaatactgacatgcgtcttagttgtctggcctttatctgcagtcctcttgtacct-ttatatcacagttttctaa--aacaattttgtttttgcagTTTGTTGACGAGAAGGTTCAATGGATGCATATTGACATGGCTGGTCCGGTGTGGAATGAAAAGCAGCGCTGTGCAACAGGATTTGGTGTTGCTACTTTGG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G36530.1 (Glycine max), 3'ss of exon 9
taactgttcaaaaaatgaactgaaaaaactgtaggattatt--tgtgagctttctttgttaatt---gtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
|      |   ||| ||   |    |        | || ||  ||||   || |  ||   |||   ||| | |  |  |||||  || |   |      |||||||||| || || |||||||| |||||||| || |||||||| ||||| || ||||| || ||||||||  | |||||||||||||||||| | ||| | |
ttgtaaatatgaaagtgtgtttctcagttgtctagcttcttgttgtgtagttccactgcatattcatgttagcggtttctgaaacaattttcct-----tttcagTTTGTTGATGAAAAGGTTCAATGGATGCACATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGCTCAGCAACAGGATTTGGCATTGCTACTTTAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G08150.1 (Glycine max), 3'ss of exon 9
-taactgttcaaaaaatgaactgaaaaaactgtaggattatttgtgagctttctttgttaattgtttgggaataatgaaatcatctatgtggttgctt--cagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
 ||| | |   ||   ||   |    |   |||  |  |  ||||    |   |  | |     ||   |  ||      ||    |     || |||  |||||||| || || |||||||| |||||||| || |||||||| ||||| || ||||| || ||||||||  | |||||||||||||||||| | ||| | |
gtaaatatg-gaagtgtgtgtttcttag-ttgtctggcttcttgttgtgtcgttccgctgcacattcatgt-tagcagtttctgaaacaattttcctttacagTTTGTTGATGAAAAGGTTCAATGGATGCACATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGTTCAGCAACAGGATTTGGCATTGCTACTTTAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G24200.2 (Arabidopsis thaliana), 3'ss of exon 10
taactgttcaaaaaatgaactgaaaaaac-tgtaggattatttgtga----gctttctttgttaattgtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
    ||   | ||| |    | | |     |  |    | ||| |||       ||| | | | |  ||     ||  ||    |  | | ||||||     |||||||||   |||||||| || |||||||||||||||||||| || || || |||||||| ||||||  | |||  || || |||||  || | || || |
---gtgaaaacaaagtccctttagaggctatacatacatgtttttgacaaaaaattcgtcggtgaaagtaactaaaccatcctctattttctgtggt-atggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTGTGGAACGAGAAGAAGAAGTCTGGGACCGGGTTTGGTGTTGCTACGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110395105|gb|EC960661.1|EC960661
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110716887|gb|EE092262.1|EE092262
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110387421|gb|EC952084.1|EC952084
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|351027495|gb|FQ444744.1|FQ444744
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|26266040|gb|CA817103.1|CA817103
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110391662|gb|EC956652.1|EC956652
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110407927|gb|EC973545.1|EC973545
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110401229|gb|EC967832.1|EC967832
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|34414873|gb|CF413627.1|CF413627
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110423246|gb|EC989587.1|EC989587
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110378787|gb|EC943935.1|EC943935
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352782298|gb|FQ470200.1|FQ470200
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|34362574|gb|CF404159.1|CF404159
EST:     GTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: GTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|349826195|gb|FQ416000.1|FQ416000
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|30127921|gb|CB913260.1|CB913260
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352773488|gb|FQ472270.1|FQ472270
EST:     CTGGTGGCCGTCCCGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|77586433|gb|DV222342.1|DV222342
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352782236|gb|FQ470138.1|FQ470138
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|351023125|gb|FQ432508.1|FQ432508
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352781590|gb|FQ468888.1|FQ468888
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110359619|gb|EC921397.1|EC921397
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352782198|gb|FQ470100.1|FQ470100
EST:     CTGGTGGCCGTCCCGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110368156|gb|EC932124.1|EC932124
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110700000|gb|EE077540.1|EE077540
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110373451|gb|EC937689.1|EC937689
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352774164|gb|FQ474687.1|FQ474687
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|352773813|gb|FQ472595.1|FQ472595
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|349826711|gb|FQ418802.1|FQ418802
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110730945|gb|EE108605.1|EE108605
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
EST: gi|110356896|gb|EC920053.1|EC920053
EST:     CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAG                         TTTGTGGATGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT
genomic: CTGGTGGCCGTCCAGGTGGTGCTATCACTGCAGCTCTGTTCTTGAAACAGgtaagcggat ... gttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttctttgttaattgtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG
         tgttaat  putative branch site (score: 3)
                                              ttgcttc  putative PPT
       tttgttaattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taactgttcaaaaaatgaactgaaaaaactgtaggattatttgtgagctttctttgttaattgtttgggaataatgaaatcatctatgtggttgcttcagTTTGTGGACGAGAAGGTTCAGTGGATGCATATCGACATGGCCGGTCCAGTTTGGAACGATAAGAAGCGGGCTGCAACAGGATTTGGCATTTCAACTCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - -aaaaaat
- - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - ctgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtg