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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgtttccaaatacactgattggaagcctactttgatgttaagctctattgaatttgactggaaagttttactactttctcagGTCCTTTGTCGGGGTTATCCAACAGAATTTGCTTCATACTTCCACTACTGTCGTTCACTGCGATTTGATGATAAGCCAGATTATGCTTATCTGAAAAGGA

Basic information

species Vitis vinifera
transcript Vv11s0016g01950.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965865|gb|GW837348.1|GW837348
EST:     AACAAAAGTATGAGAAAATTAGTGAAAGAAAAGTTTCCACATCGATTGAG                         GTCCTTTGTCGGGGTTATCCAACAGAATTTGCTTCATACTTCCACTACTGT
genomic: AACAAAAGTATGAGAAAATTAGTGAAAGAAAAGTTTCCACATCGATTGAGgtaacttgtt ... actttctcagGTCCTTTGTCGGGGTTATCCAACAGAATTTGCTTCATACTTCCACTACTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttgatgttaagctctattgaatttgactggaaagttttactactttctcagGTCCTTTGTCGGGGTTATCCAACAGAATTTGCTTCATACTTCCACTACTGTCGTTCACTGCGATTTGATGATAAGCCAGATTATGCTTATCTGAAAAGGA
                        atttgac  putative branch site (score: 4)
                                      ttttactactttctc  putative PPT
                  tattgaattt  TA-rich tract