1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcattgcttatctctctcatatggtttggttttttctcgagctatatccctgcagtaactgcaggtattaattctatcatatgttttttctttaccctgcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTCTGATGAATCTGGAATCAAGA
species | Vitis vinifera |
transcript | Vv09s0002g03200.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTGATATTGCTGCAGGAGAGCTACTTTCAATTGCTTCACCTGGACAAG TTGACCAGGTACAGCTTACTCGTGCTAAAGAGGCAACTAAATCTGCCGTTCEST: gi|110426436|gb|EC992846.1|EC992846
genomic: AGTTGATATTGCTGCAGGAGAACTACTTTCAATTGCTTCACCTGGACAAGgttcattgct ... gcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTC
EST: AGTTGATATTGCTGCAGGAGAGCTACTTTCAATTGCTTCACCTGGACAAG TTGACCAGGTACAGCTTACTCGTGCTAAAGAGGCAACTAAATCTGCCGTTCEST: gi|30256164|gb|CB972007.1|CB972007
genomic: AGTTGATATTGCTGCAGGAGAACTACTTTCAATTGCTTCACCTGGACAAGgttcattgct ... gcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTC
EST: AGTTGATATTGCTGCAGGAGAACTACTTTCAATTGCTTCACCTGGACAAG TTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTCEST: gi|110421253|gb|EC987548.1|EC987548
genomic: AGTTGATATTGCTGCAGGAGAACTACTTTCAATTGCTTCACCTGGACAAGgttcattgct ... gcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTC
EST: AGTTGATATTGCTGCAGGAGAGCTACTTTCAATTGCTTCACCTGGACAAG TTGACCAGGTACAGCTTACTCGTGCTAAAGAGGCAACTAAATCTGCCGTTC
genomic: AGTTGATATTGCTGCAGGAGAACTACTTTCAATTGCTTCACCTGGACAAGgttcattgct ... gcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTC
agtaactgcaggtattaattctatcatatgttttttctttaccctgcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTCTGATGAATCTGGAATCAAGA
tattaat putative branch site (score: 2)
ttttttctttaccctg putative PPT
tattaattctatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattgcttatctctctcatatggtttggttttttctcgagctatatccctgcagtaactgcaggtattaattctatcatatgttttttctttaccctgcgctgacagTTGACCAGGTACAGCTTACTCGTGCCAAAGAGGCAACTAAATCTGCCGTTCTGATGAATCTGGAATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG