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gtatgtgactttgatgggtatctctaattgcaatggcctgtccaacctttgtacctgaacttagattacctgttataagaatcagaatttactactttctttgtcattctccgctaaaacacttacgatattataaaggaatgaataactgttggctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTGTTGTGGAGTTCTACCTCCTCAAGAGGTTTCCCATTCCATATG
species | Vitis vinifera |
transcript | Vv08s0007g04230.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGATTCCA-ACTGGGTCCACTCCTTCTTGAGATTGGTGTCACCCCCCAG GTTGCA-GCGCGACAGCAACTTTTGEST: gi|30137128|gb|CB922466.1|CB922466
genomic: TGGATTC-ATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTG
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110718237|gb|EE094838.1|EE094838
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|30127341|gb|CB912680.1|CB912680
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110716984|gb|EE092443.1|EE092443
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: CTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110720724|gb|EE096897.1|EE096897
genomic: CTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110714603|gb|EE091700.1|EE091700
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|30130563|gb|CB915902.1|CB915902
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110382176|gb|EC938689.1|EC938689
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|110716151|gb|EE090882.1|EE090882
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTTCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTEST: gi|71888381|gb|DT037436.1|DT037436
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
EST: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAG GTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
genomic: GTGGATTCATACTGGGTCCACTCCTCCTTGAGATTGGTGTCATCCCCCAGgtatgtgact ... gctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCT
tccgctaaaacacttacgatattataaaggaatgaataactgttggctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTGTTGTGGAGTTCTACCTCCTCAAGAGGTTTCCCATTCCATATG
gaataac putative branch site (score: 2)
ctttcac putative PPT
atattataaaggaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgactttgatgggtatctctaattgcaatggcctgtccaacctttgtacctgaacttagattacctgttataagaatcagaatttactactttctttgtcattctccgctaaaacacttacgatattataaaggaatgaataactgttggctttcacagGTTGCAAGCGCGACAGCAACTTTTGTGATGATGTTCTCATCATCCTTATCTGTTGTGGAGTTCTACCTCCTCAAGAGGTTTCCCATTCCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG