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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 9
---gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
     ||  ||      |  ||  |||| |        |         | | |     ||    | |   || ||    |||| |||| || |   |   |||||||| |||||||| |||||||||||||||||||| |||||| |||| ||||| |||||||| || ||||| ||||||||| |||| || ||||||||||
acttgcaggaacaaaacaaatttctgttagtttctgttgcaatgcaatgtgctgaaaaatcatttgaaattgatgaggagtttggttgatgaa---actgcagGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 9
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
         ||  | ||   ||    |  || | |    |   || |   |  ||||    |||||       ||       || || |  |  || |||||||| || ||||| ||||||||||| || ||||| |||||| |||||||||| ||||||||  | ||||| || |||||  |||| |||||||||||||
---------gtactgccca-ttaaccgttatgttctttcatgatata-ccaactgatttacttatgtcacgaaaa------attcgtctcctggaa-cagGTTCCTCCTGGCACACCAGTGGTGAACGCCCTGGCAAAGCAGAGGGCAATGCTTGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCCGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 3'ss of exon 8
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcat---------tatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
           |  |        | || | |   |    |  ||   |||  || ||   ||         | |  |  ||| |||     || || |  |  || |||||||| || ||||| ||||||||||| || ||||| |||||| |||||||||| ||||||||  | ||||| || |||||  |||| |||||||||||||
------gtgagtgcatacatgcatctgtactgcccattaaccgttatgttctttcatgatataccaactgatttacttatgtcacgaaaaattcgtctcctggaa-cagGTTCCTCCTGGCACACCAGTGGTGAACGCCCTGGCAAAGCAGAGGGCAATGCTTGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCCGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 9
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
       |||  ||  |  || |  |  | |  |  |    || |  |    ||| |   ||   |  | |       | |         | ||  |||||||||||| ||||| || |||||||| || || || |||||| |||| ||||| ||||||||  | |||||||| |||||  |||| || ||||||||||
-----gtaagccttttcgcct-gcattaattccggcatcgctgcaccgcatcttgctccaatccagccgctaatcttctcttacaaaacctgaatgacagGTTCCACCCGGCACACCGGTGGTGAACGCTCTTGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCTTGCGTTGGCCTGGCCCCAGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 7
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
       |||  ||  |  || |  |  | | ||  |    || |  |    ||| |   ||   |  | |       | |         | ||  ||||||||  || ||||| |  ||||||||||| ||||| |||||| |||| ||||| ||||||||  | ||||| ||||||||  |||| |  ||||||||||
-----gtaagccttttcgcct-gcattaattctggcatcgctgcaccgcatcttgctctaatctagccgctaatcttctcttacaaaacctgaacgacagGTTCTGCCCGGCACACTGGTGGTGAATGCTCTGGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGTGTTGGCCTGGCCCTAGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 9
gacatcaaagttttacct-tcttgtttggaat-atgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtg-----tattaaaa-acagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
       |||| | |  | |||  ||   |||  | |   |||| |     |      |   ||||  || || | |  || |||          |||||||  ||||||||||||  | || |||||||| ||||||||| | |||||||| || ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||
-----gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccctttgatta--attttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------------------------------gacatcaaagttttaccttcttgtttgg--aatatgcgaggaatgtagagttagttga--tagcattatgatgttgtaacgttttgttggtgtattaaaaaca-----------gGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
                                                                                      ||  |  |   |   |   |||     | | | |   |||| |    ||  |     || |||| |  | |   ||   || |   |  || | | ||||           ||||||||| || || ||||||||||||||| || | |||||||| |||||||| || |||||| | |||||||||||||||||||| || ||||| ||||
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 9
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagt-tagttgatagcatta--tgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
    || || |  ||||   |  |    | | | | | ||||  |   | |  ||     | |||  | |  || | |  |    ||  |  ||||    ||||||||||| || || ||||||||||||||  || | |||||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||
---gtctaa-tactaccgattcat---aattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaatta----cagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 6
gacatcaaagttttac-cttcttgtttggaat-atgcgaggaatgtagagt-tagttgatagcatta--tgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
       |||| | |  || |   ||   |||  | | | ||||  |   | |  ||     | |||  | |  || | |  |    ||  |  ||||    ||||||||||| || || ||||||||||||||  || | |||||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||
-----gtaagtctaatactaccgattcataattgttcaatgaattaattctctcatttccccctttaattaaatttctgaaatacaattattaaatta----cagGTTCCACCGGGTACACCAGTGGTGAATGCGTTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTGAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 9
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
                   |      | |  |    |  | |||   |||  |  ||   |      |  | |||| |    ||  |  | | ||  |||||||| || ||||| ||||| || |||||  || |||| ||||| |||||||| |||||| |||| || |||||||||||| | ||||| ||||||||||
--------------gtaagcaaaaccgaagca---aaacattgtgccgtttttcaatcctagcgacttcctttaacatcactttcattcaatgaatgcagGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCGAAACAGCGTGCAATGCTTGAGAACGTACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110380748|gb|EC946038.1|EC946038
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|32245283|gb|CD711102.1|CD711102
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110380224|gb|EC945471.1|EC945471
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|27581907|gb|CB004602.1|CB004602
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110371149|gb|EC934944.1|EC934944
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110703366|gb|EE080147.1|EE080147
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|27584208|gb|CB006903.1|CB006903
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110392888|gb|EC957465.1|EC957465
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|18458958|gb|BM437236.1|BM437236
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|27580032|gb|CB002727.1|CB002727
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCGGTGGTGAACGCACTGGCGAAGCAGCGGG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGG
EST: gi|110687646|gb|EE065294.1|EE065294
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAAGCCCCTCTG                         GTTCCACCAGGCACTCCGGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|29784522|gb|CB345364.2|CB345364
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGATCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|32245038|gb|CD710857.1|CD710857
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|34546447|gb|CF514679.1|CF514679
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGGGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110698809|gb|EE076731.1|EE076731
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110367003|gb|EC930923.1|EC930923
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110715508|gb|EE093637.1|EE093637
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAAGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110699239|gb|EE076063.1|EE076063
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTC-ACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCA-TG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|30327700|gb|CD010962.1|CD010962
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110373349|gb|EC937577.1|EC937577
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110373310|gb|EC937535.1|EC937535
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110685059|gb|EE063046.1|EE063046
EST:     CCTTCCACC-AGTTGCCACCATCCTCAGTTACCTCAC-AAGGCCCCTCTG                         GGTCCACCAGGCACTC
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTC
EST: gi|110426355|gb|EC992761.1|EC992761
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|28966389|gb|CB345422.1|CB345422
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|18458241|gb|BM436519.1|BM436519
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110707572|gb|EE084125.1|EE084125
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAAGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAACAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|33407001|gb|CF212628.1|CF212628
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGNANC-GATGGGCAAT
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGC-GGGCAAT
EST: gi|27581095|gb|CB003790.1|CB003790
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACT
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACT
EST: gi|110706220|gb|EE081554.1|EE081554
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110394196|gb|EC958827.1|EC958827
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110393199|gb|EC958269.1|EC958269
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|83274450|gb|DV938547.1|DV938547
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110414138|gb|EC979964.1|EC979964
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|71871789|gb|DT020844.1|DT020844
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|27580245|gb|CB002940.1|CB002940
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCGGTGGTGAACGCACTGGCGAAGCAGCGGGCAA
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAA
EST: gi|34550186|gb|CF518404.1|CF518404
EST:     CCTTC-ACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110704772|gb|EE081830.1|EE081830
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|18458286|gb|BM436564.1|BM436564
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCGGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|32268348|gb|CD717507.1|CD717507
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|29784589|gb|CB345506.2|CB345506
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110699378|gb|EE076322.1|EE076322
EST:     CTTCCACCCAGTTGCCNAC-ATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCANGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CTTCCACCCAGTTGCC-ACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110426092|gb|EC992489.1|EC992489
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110415028|gb|EC980897.1|EC980897
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110396188|gb|EC961869.1|EC961869
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110397386|gb|EC963121.1|EC963121
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110730377|gb|EE107389.1|EE107389
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110398285|gb|EC964538.1|EC964538
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|32268456|gb|CD717615.1|CD717615
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGA
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGA
EST: gi|110420851|gb|EC987136.1|EC987136
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110390762|gb|EC955689.1|EC955689
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|32249601|gb|CD715420.1|CD715420
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110374744|gb|EC939670.1|EC939670
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG
EST: gi|110423521|gb|EC989867.1|EC989867
EST:     CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG                         GTTCCACCAGGCACTCCAGTGGTGAACGCACTGGCGAAGCAGCGGGCAATG
genomic: CCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctct ... ttaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA
                        ttgtaac  putative branch site (score: 2)
                                         tgtattaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacatcaaagttttaccttcttgtttggaatatgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtgtattaaaaacagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA

-acatcaa
- - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - -ggaatgt