Sequence
atgc intronic sequence ATGC exonic sequencegtaatcatctctatggtttaccctgtgctattcttaaattataattcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G23080.1 (Glycine max), 3'ss of exon 9
gtaatcatctctatggtttaccctgtgctattcttaaattataa--ttcacatcctaa-tcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT----
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---gtaaacttttcattttaacat-cgcaatatttggtttgatacttttggatctgaactctgacaagcaggctattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGATGTAA
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 9
gtaatcatctctatggtttaccctg-tgctattcttaaattataattcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
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gtaa--acttttaatttttacatcgctatagttgatacttttgtatctaaactctga-caagcaagctat----tttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G23080.2 (Glycine max), 3'ss of exon 9
gtaatcatctctatggtttaccctgtgctattcttaaattataa--ttcacatcctaa-tcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
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---gtaaacttttcattttaacat-cgcaatatttggtttgatacttttggatctgaactctgacaagcaggctattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAATATGCCAAGCAACTGGCTGAAGAAACATGGGGCAAGCACAAGGAT
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatcatctctatggtttacc-ctgtgctattcttaaattata-attcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
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---gtaataagaatatcttatcactgaaacatttttgtctttcataatggtatatgtttgaaactaaacacatgattgttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttaaattataattcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
tcctaat putative branch site (score: 2)
aaattataattcacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcatctctatggtttaccctgtgctattcttaaattataattcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA