1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtccaaccgctacaggagacttgtattttttttctgtgcaggcaagataagttctgctaatgaaaattcaaaatttactttattctgtttgctttgcagGTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTCCTGGTAGCTGTGATCCTAGATAACACAGTGCCTGGCAGTCGGCAAGAAC
species | Vitis vinifera |
transcript | Vv06s0061g01310.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACCATACATTGTGGCTTCTCATGGACCTTTTCGCAGCAACTATGGAGGG GTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTCEST: gi|110731292|gb|EE105586.1|EE105586
genomic: AACCATACATTGTGGCTTCTCATGGACCTTTTCGCAGCAACTATGGAGGGgtaaacatct ... tgctttgcagGTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTC
EST: ACCATACATTGTGGCTTCTCATGGACCTTTTCCGCACCA-CTATGGAGGG GTAAACTATGTTAGGAAAACATTATTGTCATTTCACATGGTAATTGCATTC
genomic: ACCATACATTGTGGCTTCTCATGGACCTTTTC-GCAGCAACTATGGAGGGgtaaacatct ... tgctttgcagGTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTC
agataagttctgctaatgaaaattcaaaatttactttattctgtttgctttgcagGTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTCCTGGTAGCTGTGATCCTAGATAACACAGTGCCTGGCAGTCGGCAAGAAC
tgctaat putative branch site (score: 2)
ttctgttt putative PPT
taatgaaaattcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtccaaccgctacaggagacttgtattttttttctgtgcaggcaagataagttctgctaatgaaaattcaaaatttactttattctgtttgctttgcagGTAAACTATGTTATGAACACATTATTGTCATTTCACATGGTAATTGCATTCCTGGTAGCTGTGATCCTAGATAACACAGTGCCTGGCAGTCGGCAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -ccaaccg
- - - - - - - - - - - - - - - - - - - gcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaat